Strain Fitness in Variovorax sp. SCN45 around GFF2188

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2187 and GFF2188 are separated by 160 nucleotidesGFF2188 and GFF2189 are separated by 68 nucleotidesGFF2189 and GFF2190 are separated by 17 nucleotides GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485 GFF2187 GFF2188 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 244,646 to 245,338 GFF2188 GFF2189 - Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3), at 245,407 to 246,015 GFF2189 GFF2190 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 246,033 to 246,758 GFF2190 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 243.848 kb on + strand, within GFF2187at 243.848 kb on + strand, within GFF2187at 243.849 kb on - strand, within GFF2187at 243.947 kb on + strand, within GFF2187at 243.947 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.055 kb on + strand, within GFF2187at 244.056 kb on - strand, within GFF2187at 244.056 kb on - strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.061 kb on + strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.062 kb on - strand, within GFF2187at 244.106 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.193 kb on + strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.194 kb on - strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.271 kb on + strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.272 kb on - strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.277 kb on + strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.278 kb on - strand, within GFF2187at 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.460 kb on + strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.461 kb on - strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.591 kb on + strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.592 kb on - strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.593 kb on + strandat 244.594 kb on - strandat 244.752 kb on + strand, within GFF2188at 244.753 kb on - strand, within GFF2188at 244.753 kb on - strand, within GFF2188at 244.753 kb on - strand, within GFF2188at 244.787 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.847 kb on + strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.848 kb on - strand, within GFF2188at 244.871 kb on + strand, within GFF2188at 244.871 kb on + strand, within GFF2188at 244.871 kb on + strand, within GFF2188at 244.872 kb on - strand, within GFF2188at 244.872 kb on - strand, within GFF2188at 244.936 kb on + strand, within GFF2188at 244.937 kb on - strand, within GFF2188at 244.955 kb on + strand, within GFF2188at 244.955 kb on + strand, within GFF2188at 244.956 kb on - strand, within GFF2188at 244.956 kb on - strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.958 kb on + strand, within GFF2188at 244.959 kb on - strand, within GFF2188at 244.959 kb on - strand, within GFF2188at 244.959 kb on - strand, within GFF2188at 244.959 kb on - strand, within GFF2188at 245.141 kb on + strand, within GFF2188at 245.141 kb on + strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.142 kb on - strand, within GFF2188at 245.165 kb on + strand, within GFF2188at 245.165 kb on + strand, within GFF2188at 245.166 kb on - strand, within GFF2188at 245.166 kb on - strand, within GFF2188at 245.270 kb on + strandat 245.270 kb on + strandat 245.270 kb on + strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.271 kb on - strandat 245.336 kb on + strandat 245.337 kb on - strandat 245.462 kb on + strandat 245.463 kb on - strandat 245.576 kb on + strand, within GFF2189at 245.577 kb on - strand, within GFF2189at 245.697 kb on - strand, within GFF2189at 245.700 kb on + strand, within GFF2189at 245.924 kb on + strand, within GFF2189at 245.925 kb on - strand, within GFF2189at 245.925 kb on - strand, within GFF2189at 246.100 kb on + strandat 246.101 kb on - strandat 246.152 kb on - strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.184 kb on + strand, within GFF2190at 246.185 kb on - strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.211 kb on + strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190at 246.212 kb on - strand, within GFF2190

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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243,848 + GFF2187 0.25 -1.2
243,848 + GFF2187 0.25 -0.6
243,849 - GFF2187 0.25 -0.4
243,947 + GFF2187 0.37 +0.2
243,947 + GFF2187 0.37 +2.8
244,055 + GFF2187 0.50 -0.4
244,055 + GFF2187 0.50 -0.3
244,055 + GFF2187 0.50 +0.9
244,055 + GFF2187 0.50 +0.4
244,056 - GFF2187 0.50 -1.2
244,056 - GFF2187 0.50 -0.2
244,061 + GFF2187 0.50 +3.3
244,061 + GFF2187 0.50 -0.3
244,061 + GFF2187 0.50 -0.3
244,061 + GFF2187 0.50 -0.3
244,061 + GFF2187 0.50 -0.4
244,062 - GFF2187 0.50 +0.7
244,062 - GFF2187 0.50 -1.8
244,062 - GFF2187 0.50 -0.2
244,062 - GFF2187 0.50 -0.1
244,062 - GFF2187 0.50 -0.5
244,106 + GFF2187 0.56 -1.5
244,193 + GFF2187 0.66 -0.2
244,193 + GFF2187 0.66 -0.2
244,193 + GFF2187 0.66 -0.4
244,194 - GFF2187 0.66 +4.3
244,194 - GFF2187 0.66 +0.7
244,194 - GFF2187 0.66 -0.7
244,194 - GFF2187 0.66 -0.7
244,194 - GFF2187 0.66 -0.5
244,194 - GFF2187 0.66 +0.4
244,194 - GFF2187 0.66 -1.9
244,194 - GFF2187 0.66 -0.3
244,194 - GFF2187 0.66 -0.1
244,194 - GFF2187 0.66 -0.9
244,271 + GFF2187 0.75 -0.4
244,271 + GFF2187 0.75 -0.8
244,271 + GFF2187 0.75 -0.6
244,272 - GFF2187 0.75 -0.3
244,272 - GFF2187 0.75 -0.1
244,272 - GFF2187 0.75 -0.8
244,277 + GFF2187 0.76 -0.9
244,277 + GFF2187 0.76 -0.6
244,277 + GFF2187 0.76 -1.7
244,278 - GFF2187 0.76 -0.4
244,278 - GFF2187 0.76 -0.1
244,278 - GFF2187 0.76 +0.5
244,278 - GFF2187 0.76 -1.2
244,460 + -1.7
244,460 + +0.0
244,460 + +1.4
244,460 + +0.5
244,460 + +0.9
244,461 - +1.3
244,461 - +0.4
244,461 - -2.1
244,461 - -0.9
244,461 - -0.2
244,461 - -0.9
244,461 - -0.1
244,461 - -0.1
244,461 - -2.1
244,591 + -1.1
244,591 + +0.3
244,591 + +1.2
244,591 + +0.8
244,591 + -0.3
244,591 + -0.7
244,591 + +0.4
244,591 + +0.1
244,591 + -0.6
244,592 - -0.3
244,592 - -2.2
244,592 - -0.3
244,592 - +0.3
244,592 - -0.1
244,592 - -1.7
244,592 - -0.5
244,592 - +0.5
244,593 + +2.1
244,593 + -1.0
244,593 + -0.7
244,593 + -0.4
244,593 + +0.4
244,594 - -1.0
244,752 + GFF2188 0.15 -0.4
244,753 - GFF2188 0.15 +0.0
244,753 - GFF2188 0.15 +0.0
244,753 - GFF2188 0.15 -0.3
244,787 + GFF2188 0.20 -0.8
244,847 + GFF2188 0.29 -0.2
244,847 + GFF2188 0.29 -0.3
244,847 + GFF2188 0.29 +1.4
244,847 + GFF2188 0.29 -1.1
244,847 + GFF2188 0.29 -0.6
244,847 + GFF2188 0.29 -0.0
244,847 + GFF2188 0.29 +2.0
244,847 + GFF2188 0.29 +0.5
244,847 + GFF2188 0.29 -0.9
244,848 - GFF2188 0.29 +0.8
244,848 - GFF2188 0.29 -0.8
244,848 - GFF2188 0.29 -0.3
244,848 - GFF2188 0.29 +0.1
244,848 - GFF2188 0.29 -1.2
244,848 - GFF2188 0.29 -1.0
244,848 - GFF2188 0.29 +0.1
244,848 - GFF2188 0.29 -0.7
244,848 - GFF2188 0.29 -0.4
244,848 - GFF2188 0.29 -1.7
244,848 - GFF2188 0.29 -2.2
244,848 - GFF2188 0.29 -1.2
244,848 - GFF2188 0.29 -0.1
244,871 + GFF2188 0.32 +0.2
244,871 + GFF2188 0.32 -0.0
244,871 + GFF2188 0.32 +0.8
244,872 - GFF2188 0.33 -0.4
244,872 - GFF2188 0.33 -0.1
244,936 + GFF2188 0.42 -0.1
244,937 - GFF2188 0.42 -1.8
244,955 + GFF2188 0.45 +0.5
244,955 + GFF2188 0.45 -0.4
244,956 - GFF2188 0.45 -0.1
244,956 - GFF2188 0.45 -0.3
244,958 + GFF2188 0.45 +0.2
244,958 + GFF2188 0.45 -1.0
244,958 + GFF2188 0.45 +0.2
244,958 + GFF2188 0.45 -0.9
244,958 + GFF2188 0.45 -0.6
244,958 + GFF2188 0.45 -0.1
244,958 + GFF2188 0.45 +0.1
244,958 + GFF2188 0.45 -1.9
244,958 + GFF2188 0.45 -0.1
244,959 - GFF2188 0.45 -1.9
244,959 - GFF2188 0.45 -0.3
244,959 - GFF2188 0.45 +0.7
244,959 - GFF2188 0.45 -0.5
245,141 + GFF2188 0.71 -0.6
245,141 + GFF2188 0.71 -1.0
245,142 - GFF2188 0.72 +1.4
245,142 - GFF2188 0.72 -1.2
245,142 - GFF2188 0.72 -0.3
245,142 - GFF2188 0.72 -0.8
245,165 + GFF2188 0.75 -0.7
245,165 + GFF2188 0.75 -0.0
245,166 - GFF2188 0.75 -0.4
245,166 - GFF2188 0.75 -0.2
245,270 + +0.4
245,270 + +2.1
245,270 + -0.4
245,271 - -0.8
245,271 - -1.1
245,271 - -1.9
245,271 - -0.2
245,271 - +0.8
245,271 - -0.2
245,271 - +0.1
245,271 - -0.1
245,271 - -1.0
245,271 - +0.6
245,336 + -0.1
245,337 - +1.3
245,462 + +0.5
245,463 - -1.2
245,576 + GFF2189 0.28 -0.9
245,577 - GFF2189 0.28 -1.1
245,697 - GFF2189 0.48 -1.9
245,700 + GFF2189 0.48 -1.7
245,924 + GFF2189 0.85 +0.1
245,925 - GFF2189 0.85 -2.4
245,925 - GFF2189 0.85 -0.5
246,100 + -1.3
246,101 - -1.4
246,152 - GFF2190 0.16 -0.7
246,184 + GFF2190 0.21 +0.4
246,184 + GFF2190 0.21 +0.2
246,184 + GFF2190 0.21 -1.8
246,184 + GFF2190 0.21 -0.0
246,184 + GFF2190 0.21 +0.8
246,184 + GFF2190 0.21 -0.7
246,185 - GFF2190 0.21 -0.3
246,211 + GFF2190 0.25 +1.2
246,211 + GFF2190 0.25 +0.1
246,211 + GFF2190 0.25 -0.2
246,211 + GFF2190 0.25 -0.5
246,211 + GFF2190 0.25 -0.0
246,211 + GFF2190 0.25 -0.0
246,211 + GFF2190 0.25 -0.2
246,211 + GFF2190 0.25 -0.2
246,211 + GFF2190 0.25 -0.0
246,211 + GFF2190 0.25 +1.0
246,211 + GFF2190 0.25 -1.9
246,211 + GFF2190 0.25 +0.7
246,211 + GFF2190 0.25 -0.1
246,212 - GFF2190 0.25 +0.1
246,212 - GFF2190 0.25 -0.3
246,212 - GFF2190 0.25 -0.4
246,212 - GFF2190 0.25 +0.1
246,212 - GFF2190 0.25 -0.3
246,212 - GFF2190 0.25 +1.3
246,212 - GFF2190 0.25 -1.2
246,212 - GFF2190 0.25 -0.8
246,212 - GFF2190 0.25 +0.8
246,212 - GFF2190 0.25 -0.1
246,212 - GFF2190 0.25 +0.2
246,212 - GFF2190 0.25 -1.8
246,212 - GFF2190 0.25 -1.4
246,212 - GFF2190 0.25 +0.5
246,212 - GFF2190 0.25 +0.2
246,212 - GFF2190 0.25 +0.5
246,212 - GFF2190 0.25 -2.3
246,212 - GFF2190 0.25 +1.8
246,212 - GFF2190 0.25 +0.1
246,212 - GFF2190 0.25 +0.1
246,212 - GFF2190 0.25 +2.3

Or see this region's nucleotide sequence