Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2181 and GFF2182 are separated by 791 nucleotides GFF2182 and GFF2183 are separated by 10 nucleotides
GFF2181 - no description, at 234,402 to 234,650
GFF2181
GFF2182 - Inner membrane component of TAM transport system, at 235,442 to 239,530
GFF2182
GFF2183 - Outer membrane component of TAM transport system, at 239,541 to 241,478
GFF2183
Position (kb) 235
236
237
238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.612 kb on + strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.864 kb on + strand at 234.865 kb on - strand at 234.869 kb on + strand at 234.869 kb on + strand at 234.870 kb on - strand at 234.870 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.976 kb on + strand at 234.982 kb on - strand at 235.002 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.074 kb on - strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.369 kb on - strand at 235.369 kb on - strand at 235.398 kb on + strand at 235.399 kb on - strand at 235.399 kb on - strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.450 kb on - strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.839 kb on + strand at 235.840 kb on - strand at 235.840 kb on - strand at 237.231 kb on + strand, within GFF2182 at 237.231 kb on + strand, within GFF2182 at 237.232 kb on - strand, within GFF2182 at 237.232 kb on - strand, within GFF2182 at 238.314 kb on + strand, within GFF2182 at 238.314 kb on + strand, within GFF2182 at 238.314 kb on + strand, within GFF2182 at 238.315 kb on - strand, within GFF2182 at 238.315 kb on - strand, within GFF2182 at 238.315 kb on - strand, within GFF2182 at 238.315 kb on - strand, within GFF2182 at 238.920 kb on + strand, within GFF2182 at 238.921 kb on - strand, within GFF2182 at 238.921 kb on - strand, within GFF2182 at 238.921 kb on - strand, within GFF2182 at 238.921 kb on - strand, within GFF2182 at 238.921 kb on - strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.977 kb on + strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.978 kb on - strand, within GFF2182 at 238.983 kb on + strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 238.984 kb on - strand, within GFF2182 at 239.244 kb on + strand at 239.245 kb on - strand at 239.365 kb on + strand at 239.366 kb on - strand at 239.366 kb on - strand at 239.366 kb on - strand at 239.746 kb on + strand, within GFF2183 at 239.747 kb on - strand, within GFF2183 at 239.747 kb on - strand, within GFF2183 at 239.747 kb on - strand, within GFF2183 at 239.839 kb on + strand, within GFF2183 at 239.839 kb on + strand, within GFF2183 at 239.839 kb on + strand, within GFF2183 at 239.839 kb on + strand, within GFF2183 at 239.839 kb on + strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.840 kb on - strand, within GFF2183 at 239.846 kb on - strand, within GFF2183 at 240.019 kb on + strand, within GFF2183 at 240.019 kb on + strand, within GFF2183 at 240.019 kb on + strand, within GFF2183 at 240.019 kb on + strand, within GFF2183 at 240.020 kb on - strand, within GFF2183 at 240.020 kb on - strand, within GFF2183 at 240.122 kb on - strand, within GFF2183 at 240.196 kb on + strand, within GFF2183 at 240.202 kb on + strand, within GFF2183 at 240.203 kb on - strand, within GFF2183 at 240.203 kb on - strand, within GFF2183 at 240.215 kb on - strand, within GFF2183 at 240.215 kb on - strand, within GFF2183 at 240.215 kb on - strand, within GFF2183 at 240.215 kb on - strand, within GFF2183 at 240.280 kb on + strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183 at 240.281 kb on - strand, within GFF2183
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 234,535 + GFF2181 0.53 +0.5 234,535 + GFF2181 0.53 -0.3 234,535 + GFF2181 0.53 -0.2 234,535 + GFF2181 0.53 +1.6 234,535 + GFF2181 0.53 -1.5 234,535 + GFF2181 0.53 -0.3 234,536 - GFF2181 0.54 -0.2 234,536 - GFF2181 0.54 +0.2 234,536 - GFF2181 0.54 +0.5 234,536 - GFF2181 0.54 -0.9 234,536 - GFF2181 0.54 +0.6 234,550 + GFF2181 0.59 -1.8 234,550 + GFF2181 0.59 +0.2 234,551 - GFF2181 0.60 -0.4 234,551 - GFF2181 0.60 -1.2 234,551 - GFF2181 0.60 +0.1 234,551 - GFF2181 0.60 +0.3 234,612 + GFF2181 0.84 +0.3 234,613 - GFF2181 0.85 -0.7 234,613 - GFF2181 0.85 -1.1 234,613 - GFF2181 0.85 -0.5 234,633 + -0.9 234,633 + -0.2 234,633 + -0.1 234,633 + +0.2 234,634 - +0.6 234,634 - -0.7 234,634 - -1.1 234,634 - -0.7 234,634 - -1.2 234,634 - -0.1 234,636 - +1.0 234,636 - -0.6 234,636 - +0.3 234,864 + -0.7 234,865 - -0.7 234,869 + -0.9 234,869 + -0.8 234,870 - -0.1 234,870 - -0.1 234,910 + -0.5 234,910 + +0.8 234,911 - -0.1 234,911 - +0.8 234,911 - -1.1 234,911 - +0.8 234,930 + -0.2 234,930 + -0.5 234,930 + -0.2 234,931 - -2.1 234,931 - -0.8 234,931 - +0.3 234,931 - +1.6 234,931 - -0.7 234,931 - +0.2 234,976 + -0.7 234,982 - +0.8 235,002 + +0.3 235,073 + -0.3 235,073 + -0.2 235,073 + -0.2 235,073 + +0.4 235,073 + -1.6 235,073 + +0.8 235,073 + -0.3 235,073 + -0.0 235,073 + +1.0 235,073 + -0.7 235,074 - -1.7 235,329 + -0.6 235,329 + -2.3 235,329 + -0.6 235,329 + -1.7 235,329 + -3.1 235,330 - +0.3 235,330 - -0.5 235,330 - -2.3 235,330 - -1.2 235,330 - +1.2 235,340 + -0.4 235,340 + -0.1 235,340 + -1.3 235,340 + -1.0 235,340 + -0.8 235,356 + -0.9 235,356 + -1.1 235,356 + -3.1 235,356 + -1.0 235,357 - -4.0 235,357 - +0.2 235,357 - +1.8 235,368 + -0.8 235,368 + -1.1 235,368 + -0.7 235,369 - -0.6 235,369 - -1.1 235,398 + -1.9 235,399 - -0.0 235,399 - -0.4 235,449 + -0.7 235,449 + -0.2 235,449 + +0.5 235,449 + -1.6 235,450 - +0.1 235,459 + -1.2 235,459 + -1.8 235,459 + +1.2 235,460 - -1.6 235,460 - -1.3 235,460 - -0.4 235,461 + -1.0 235,461 + -1.7 235,461 + +0.2 235,461 + -1.4 235,461 + +0.2 235,461 + -1.3 235,461 + -0.8 235,462 - -2.0 235,462 - -0.8 235,462 - -1.6 235,462 - -0.7 235,462 - -0.6 235,462 - +0.5 235,462 - -1.3 235,462 - -1.0 235,528 - -0.8 235,528 - -0.2 235,528 - -1.3 235,572 + -1.4 235,572 + -1.6 235,572 + -2.2 235,572 + -0.2 235,573 - -0.5 235,573 - -1.4 235,573 - -1.2 235,573 - -1.2 235,573 - +0.0 235,573 - -1.1 235,581 + -0.8 235,581 + -0.8 235,581 + -0.5 235,581 + -1.3 235,581 + -1.5 235,581 + +0.2 235,581 + -0.8 235,581 + +0.4 235,581 + -0.8 235,582 - +0.4 235,582 - +0.0 235,582 - -0.5 235,582 - -0.4 235,582 - +0.3 235,582 - +0.2 235,582 - -0.9 235,582 - +1.0 235,582 - -0.8 235,582 - -1.6 235,582 - -0.9 235,582 - -1.7 235,839 + -0.6 235,840 - -0.9 235,840 - -1.8 237,231 + GFF2182 0.44 -1.6 237,231 + GFF2182 0.44 -0.2 237,232 - GFF2182 0.44 -0.5 237,232 - GFF2182 0.44 -1.0 238,314 + GFF2182 0.70 -1.5 238,314 + GFF2182 0.70 -1.2 238,314 + GFF2182 0.70 -1.7 238,315 - GFF2182 0.70 -0.9 238,315 - GFF2182 0.70 -0.9 238,315 - GFF2182 0.70 -2.1 238,315 - GFF2182 0.70 -0.9 238,920 + GFF2182 0.85 +0.1 238,921 - GFF2182 0.85 -2.5 238,921 - GFF2182 0.85 -0.3 238,921 - GFF2182 0.85 +0.4 238,921 - GFF2182 0.85 -2.0 238,921 - GFF2182 0.85 -0.9 238,977 + GFF2182 0.86 -1.5 238,977 + GFF2182 0.86 -1.1 238,977 + GFF2182 0.86 -0.4 238,977 + GFF2182 0.86 -2.0 238,977 + GFF2182 0.86 -2.7 238,977 + GFF2182 0.86 -0.8 238,978 - GFF2182 0.86 -1.6 238,978 - GFF2182 0.86 -1.0 238,978 - GFF2182 0.86 -1.2 238,978 - GFF2182 0.86 -1.2 238,978 - GFF2182 0.86 +0.2 238,978 - GFF2182 0.86 -0.4 238,983 + GFF2182 0.87 -2.8 238,984 - GFF2182 0.87 +0.5 238,984 - GFF2182 0.87 -1.8 238,984 - GFF2182 0.87 -1.3 238,984 - GFF2182 0.87 -0.8 238,984 - GFF2182 0.87 -1.1 238,984 - GFF2182 0.87 -0.8 238,984 - GFF2182 0.87 -2.6 238,984 - GFF2182 0.87 -0.9 238,984 - GFF2182 0.87 -0.6 239,244 + -1.1 239,245 - -1.1 239,365 + -0.9 239,366 - -2.5 239,366 - -0.9 239,366 - -1.4 239,746 + GFF2183 0.11 -1.6 239,747 - GFF2183 0.11 -1.5 239,747 - GFF2183 0.11 -2.6 239,747 - GFF2183 0.11 +0.8 239,839 + GFF2183 0.15 -1.1 239,839 + GFF2183 0.15 -2.6 239,839 + GFF2183 0.15 -2.0 239,839 + GFF2183 0.15 -0.5 239,839 + GFF2183 0.15 -0.8 239,840 - GFF2183 0.15 -2.6 239,840 - GFF2183 0.15 -1.1 239,840 - GFF2183 0.15 -0.2 239,840 - GFF2183 0.15 -1.0 239,840 - GFF2183 0.15 -4.0 239,840 - GFF2183 0.15 -1.0 239,840 - GFF2183 0.15 -0.5 239,846 - GFF2183 0.16 -0.9 240,019 + GFF2183 0.25 -1.4 240,019 + GFF2183 0.25 -0.6 240,019 + GFF2183 0.25 -1.8 240,019 + GFF2183 0.25 +1.3 240,020 - GFF2183 0.25 -0.5 240,020 - GFF2183 0.25 -1.7 240,122 - GFF2183 0.30 -2.7 240,196 + GFF2183 0.34 +1.3 240,202 + GFF2183 0.34 -0.8 240,203 - GFF2183 0.34 -0.1 240,203 - GFF2183 0.34 -2.8 240,215 - GFF2183 0.35 -1.4 240,215 - GFF2183 0.35 -1.1 240,215 - GFF2183 0.35 -1.7 240,215 - GFF2183 0.35 -2.5 240,280 + GFF2183 0.38 -0.7 240,281 - GFF2183 0.38 -1.7 240,281 - GFF2183 0.38 -1.3 240,281 - GFF2183 0.38 -1.6 240,281 - GFF2183 0.38 -1.1 240,281 - GFF2183 0.38 -0.6 240,281 - GFF2183 0.38 -1.3 240,281 - GFF2183 0.38 +0.5
Or see this region's nucleotide sequence