Strain Fitness in Variovorax sp. SCN45 around GFF2143

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
191,527	+		GFF2141	0.90	-0.6
191,527	+		GFF2141	0.90	-1.6
191,527	+		GFF2141	0.90	-0.3
191,527	+		GFF2141	0.90	-0.2
191,527	+		GFF2141	0.90	-1.1
191,527	+		GFF2141	0.90	+0.8
191,527	+		GFF2141	0.90	-1.6
191,527	+		GFF2141	0.90	-1.2
191,527	+		GFF2141	0.90	-0.3
191,528	-		GFF2141	0.90	-0.2
191,528	-		GFF2141	0.90	-0.9
191,528	-		GFF2141	0.90	-0.4
191,528	-		GFF2141	0.90	-0.2
191,528	-		GFF2141	0.90	+1.3
191,528	-		GFF2141	0.90	+0.2
191,528	-		GFF2141	0.90	+0.8
191,528	-		GFF2141	0.90	+0.3
191,593	+				-0.0
191,593	+				+1.8
191,593	+				-0.5
191,593	+				+0.2
191,593	+				-0.4
191,593	+				+0.6
191,593	+				+0.6
191,593	+				+0.8
191,593	+				-0.6
191,594	-				+1.3
191,594	-				+0.8
191,594	-				-0.4
191,594	-				-2.3
191,594	-				-0.6
191,594	-				-0.6
191,594	-				-1.1
191,594	-				-0.2
191,638	+				-0.3
191,638	+				-0.2
191,638	+				-1.0
191,638	+				-0.2
191,638	+				-0.5
191,639	-				+2.0
191,639	-				-0.8
191,641	+				+0.4
191,641	+				-0.5
191,775	+				-0.7
191,775	+				-0.7
191,776	-				+1.8
192,410	+		GFF2142	0.88	-0.2
192,411	-		GFF2142	0.89	+0.2
192,440	+				-0.9
192,441	-				-0.4
192,441	-				+1.5
192,441	-				-0.4
192,441	-				+0.4
192,546	+				-0.1
192,546	+				-1.0
192,547	-				+1.0
192,573	+		GFF2143	0.14	+0.9
192,573	+		GFF2143	0.14	-0.8
192,573	+		GFF2143	0.14	-0.2
192,573	+		GFF2143	0.14	-0.6
192,574	-		GFF2143	0.14	-0.2
192,574	-		GFF2143	0.14	-0.7
192,574	-		GFF2143	0.14	-0.6
192,574	-		GFF2143	0.14	-1.1
192,574	-		GFF2143	0.14	-1.4
192,574	-		GFF2143	0.14	-0.6
192,574	-		GFF2143	0.14	-0.0
192,574	-		GFF2143	0.14	-0.2
192,574	-		GFF2143	0.14	+0.8
192,723	+		GFF2143	0.46	-0.6
192,724	-		GFF2143	0.46	+0.5
192,724	-		GFF2143	0.46	+0.1
192,724	-		GFF2143	0.46	+1.8
192,751	-		GFF2143	0.52	+0.5
192,924	+		GFF2143	0.89	-0.2
192,924	+		GFF2143	0.89	-2.1
192,925	-		GFF2143	0.89	-0.0
192,973	+				+0.2
192,973	+				-0.6
192,973	+				+0.1
192,974	-				+1.0
192,974	-				-0.7
192,974	-				-0.6
192,986	+				+1.0
192,986	+				-1.0
192,986	+				-0.8
192,986	+				-1.4
192,986	+				-0.1
192,987	-				-2.0
192,987	-				+0.9
192,987	-				-1.1
192,987	-				-0.0
192,988	+				+0.7
192,988	+				+1.0
192,988	+				+0.2
192,988	+				-0.2
192,989	-				-0.6
192,989	-				+0.6
192,989	-				-0.9
193,044	+				+0.4
193,044	+				+0.2
193,044	+				+0.1
193,404	+		GFF2144	0.24	+0.9
193,404	+		GFF2144	0.24	+0.1
193,404	+		GFF2144	0.24	-0.2
193,405	-		GFF2144	0.24	-1.7
193,405	-		GFF2144	0.24	+0.1
193,405	-		GFF2144	0.24	+0.6
193,405	-		GFF2144	0.24	-0.4
193,689	+		GFF2144	0.51	-0.9
193,689	+		GFF2144	0.51	-1.2
193,689	+		GFF2144	0.51	-0.9
193,689	+		GFF2144	0.51	-0.6
193,689	+		GFF2144	0.51	-1.5
193,690	-		GFF2144	0.51	+1.0
193,690	-		GFF2144	0.51	+1.1
193,690	-		GFF2144	0.51	+0.2
193,690	-		GFF2144	0.51	-0.2
193,690	-		GFF2144	0.51	-0.9
193,690	-		GFF2144	0.51	+0.2
193,959	+		GFF2144	0.77	-1.2
193,960	-		GFF2144	0.77	-0.0
193,960	-		GFF2144	0.77	+0.2
193,960	-		GFF2144	0.77	+0.8
193,960	-		GFF2144	0.77	-1.8
193,960	-		GFF2144	0.77	-0.1
193,960	-		GFF2144	0.77	-1.7
193,969	-		GFF2144	0.77	-0.2