Strain Fitness in Variovorax sp. SCN45 around GFF1885

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
558,874	+		GFF1884	0.62	+0.2
558,875	-		GFF1884	0.62	-0.2
558,875	-		GFF1884	0.62	-0.4
559,070	-				-0.1
559,070	-				+0.4
559,285	+		GFF1885	0.15	-1.3
559,285	+		GFF1885	0.15	-0.3
559,286	-		GFF1885	0.15	-1.3
559,286	-		GFF1885	0.15	-0.6
560,277	-		GFF1885	0.87	+1.0
560,347	+				+0.1
560,348	-				-0.2
560,957	+		GFF1886	0.18	-0.3
560,957	+		GFF1886	0.18	-1.7
560,958	-		GFF1886	0.18	-1.3
561,222	-		GFF1886	0.31	+0.4