Strain Fitness in Variovorax sp. SCN45 around GFF1479

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
69,677	+				-0.6
69,678	-				-0.1
69,836	+		GFF1478	0.26	+1.7
70,238	+		GFF1478	0.72	-0.1
70,616	+				+0.4
70,773	-		GFF1479	0.17	-0.8
70,959	-		GFF1479	0.30	-0.7
70,959	-		GFF1479	0.30	-0.2
71,628	-		GFF1479	0.74	+0.3
71,628	-		GFF1479	0.74	-0.6
71,733	+		GFF1479	0.81	-0.3
71,733	+		GFF1479	0.81	-0.7
71,734	-		GFF1479	0.81	-0.8
71,734	-		GFF1479	0.81	-0.0
71,737	+		GFF1479	0.82	+0.8
72,017	+				-0.2
72,017	+				+0.2
72,017	+				-1.1
72,017	+				+0.3
72,017	+				-0.3
72,017	+				-0.1
72,018	-				+0.2
72,018	-				-1.7
72,018	-				+0.4
72,018	-				-1.8
72,018	-				-2.0
72,018	-				+0.2
72,018	-				-0.1
72,018	-				-0.0
72,080	-				+1.1
72,113	+				+0.4
72,113	+				-0.6
72,114	-				+0.4
72,332	+		GFF1480	0.19	-0.6
72,333	-		GFF1480	0.19	+0.4
72,333	-		GFF1480	0.19	-0.2
72,347	+		GFF1480	0.20	-0.3
72,365	+		GFF1480	0.21	+0.0
72,366	-		GFF1480	0.21	-0.7
72,422	+		GFF1480	0.25	+0.1
72,423	-		GFF1480	0.25	-1.8
72,780	-		GFF1480	0.49	-0.3
72,795	-		GFF1480	0.50	-0.7
72,795	-		GFF1480	0.50	-0.6
72,797	+		GFF1480	0.50	-0.4
72,798	-		GFF1480	0.50	-1.1
72,992	+		GFF1480	0.62	-0.6