Strain Fitness in Variovorax sp. SCN45 around GFF1474

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
65,441	+		GFF1473	0.56	-1.0
65,442	-		GFF1473	0.56	+1.3
65,442	-		GFF1473	0.56	+0.7
65,447	+		GFF1473	0.56	+0.4
65,447	+		GFF1473	0.56	+0.5
65,448	-		GFF1473	0.57	-0.5
65,448	-		GFF1473	0.57	+0.1
65,805	-		GFF1473	0.82	-1.8
65,815	+		GFF1473	0.83	-0.1
65,815	+		GFF1473	0.83	+0.3
65,816	-		GFF1473	0.83	-0.2
65,938	+				-2.3
66,049	+				-0.3
66,163	+				+0.2
66,163	+				+1.7
66,175	-				-0.3
66,206	-				-1.2
66,490	+		GFF1474	0.35	-1.4
66,490	+		GFF1474	0.35	-0.3
66,490	+		GFF1474	0.35	-0.3
66,553	+		GFF1474	0.42	-0.9
67,073	-				+0.2
67,073	-				-0.3
67,073	-				+0.2
67,175	-		GFF1475	0.10	-1.3
67,318	-		GFF1475	0.33	-1.0
67,807	+				-0.3
67,807	+				+0.6
67,808	-				+0.4
67,808	-				-0.6
67,849	+				+0.7
67,849	+				-0.3
67,850	-				+1.5
67,953	-		GFF1476	0.16	+0.6
67,953	-		GFF1476	0.16	-0.6
68,068	+		GFF1476	0.31	+0.0
68,069	-		GFF1476	0.31	-0.8
68,069	-		GFF1476	0.31	+0.5
68,069	-		GFF1476	0.31	-0.3
68,069	-		GFF1476	0.31	+0.7
68,072	+		GFF1476	0.31	-0.0
68,072	+		GFF1476	0.31	-1.5
68,073	-		GFF1476	0.32	+0.2