Strain Fitness in Variovorax sp. SCN45 around GFF123

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
150,753	+				+0.1
150,753	+				+1.4
150,753	+				+2.5
150,754	-				+0.7
150,754	-				-0.7
150,995	+		GFF122	0.21	+0.2
151,058	+		GFF122	0.28	-1.3
151,059	-		GFF122	0.28	-0.4
151,376	+		GFF122	0.64	-0.4
151,460	+		GFF122	0.74	-1.0
151,764	+				-0.2
151,915	-		GFF123	0.24	+1.0
151,917	+		GFF123	0.25	+0.1
151,941	+		GFF123	0.27	+0.3
152,115	+		GFF123	0.45	-1.5
152,115	+		GFF123	0.45	-0.7
152,116	-		GFF123	0.46	+0.7
152,368	-		GFF123	0.72	-0.1
152,481	-		GFF123	0.84	-0.6
152,527	-		GFF123	0.89	+0.4
152,759	-				-0.3
152,789	-		GFF124	0.11	-0.1
152,907	+		GFF124	0.20	-0.1
153,067	+		GFF124	0.33	-0.0
153,067	+		GFF124	0.33	+0.5
153,067	+		GFF124	0.33	-0.4
153,068	-		GFF124	0.33	-0.1
153,068	-		GFF124	0.33	+0.6
153,068	-		GFF124	0.33	-0.8
153,068	-		GFF124	0.33	-1.5
153,233	-		GFF124	0.46	-2.8
153,233	-		GFF124	0.46	+1.1
153,590	-		GFF124	0.73	-0.8