Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14085 and HMPREF1181_RS14090 overlap by 4 nucleotides HMPREF1181_RS14090 and HMPREF1181_RS14095 are separated by 122 nucleotides HMPREF1181_RS14095 and HMPREF1181_RS14100 are separated by 204 nucleotides
HMPREF1181_RS14085: HMPREF1181_RS14085 - adenylosuccinate synthase, at 341,809 to 343,077
_RS14085
HMPREF1181_RS14090: HMPREF1181_RS14090 - transcriptional repressor, at 343,074 to 343,562
_RS14090
HMPREF1181_RS14095: HMPREF1181_RS14095 - DNA alkylation repair protein, at 343,685 to 344,347
_RS14095
HMPREF1181_RS14100: HMPREF1181_RS14100 - dihydrofolate reductase, at 344,552 to 346,600
_RS14100
Position (kb) 343
344 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 342.129 kb on + strand, within HMPREF1181_RS14085 at 342.138 kb on - strand, within HMPREF1181_RS14085 at 342.177 kb on + strand, within HMPREF1181_RS14085 at 342.178 kb on - strand, within HMPREF1181_RS14085 at 342.213 kb on + strand, within HMPREF1181_RS14085 at 342.277 kb on - strand, within HMPREF1181_RS14085 at 342.282 kb on - strand, within HMPREF1181_RS14085 at 342.282 kb on - strand, within HMPREF1181_RS14085 at 342.298 kb on + strand, within HMPREF1181_RS14085 at 342.361 kb on - strand, within HMPREF1181_RS14085 at 342.411 kb on + strand, within HMPREF1181_RS14085 at 342.463 kb on + strand, within HMPREF1181_RS14085 at 342.555 kb on - strand, within HMPREF1181_RS14085 at 342.602 kb on + strand, within HMPREF1181_RS14085 at 342.668 kb on + strand, within HMPREF1181_RS14085 at 342.673 kb on - strand, within HMPREF1181_RS14085 at 342.783 kb on + strand, within HMPREF1181_RS14085 at 342.784 kb on - strand, within HMPREF1181_RS14085 at 342.862 kb on + strand, within HMPREF1181_RS14085 at 342.863 kb on - strand, within HMPREF1181_RS14085 at 342.888 kb on + strand, within HMPREF1181_RS14085 at 343.012 kb on + strand at 343.013 kb on - strand at 343.058 kb on - strand at 343.069 kb on + strand at 343.070 kb on - strand at 343.070 kb on - strand at 343.089 kb on - strand at 343.286 kb on - strand, within HMPREF1181_RS14090 at 343.286 kb on - strand, within HMPREF1181_RS14090 at 343.346 kb on + strand, within HMPREF1181_RS14090 at 343.353 kb on + strand, within HMPREF1181_RS14090 at 343.353 kb on + strand, within HMPREF1181_RS14090 at 343.353 kb on + strand, within HMPREF1181_RS14090 at 343.354 kb on - strand, within HMPREF1181_RS14090 at 343.354 kb on - strand, within HMPREF1181_RS14090 at 343.367 kb on - strand, within HMPREF1181_RS14090 at 343.454 kb on - strand, within HMPREF1181_RS14090 at 343.457 kb on + strand, within HMPREF1181_RS14090 at 343.596 kb on + strand at 343.668 kb on - strand at 343.761 kb on - strand, within HMPREF1181_RS14095 at 343.925 kb on + strand, within HMPREF1181_RS14095 at 343.963 kb on + strand, within HMPREF1181_RS14095 at 344.035 kb on + strand, within HMPREF1181_RS14095 at 344.036 kb on - strand, within HMPREF1181_RS14095 at 344.042 kb on - strand, within HMPREF1181_RS14095 at 344.081 kb on + strand, within HMPREF1181_RS14095
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 342,129 + HMPREF1181_RS14085 0.25 -0.9 342,138 - HMPREF1181_RS14085 0.26 -2.1 342,177 + HMPREF1181_RS14085 0.29 -1.2 342,178 - HMPREF1181_RS14085 0.29 -2.5 342,213 + HMPREF1181_RS14085 0.32 -3.2 342,277 - HMPREF1181_RS14085 0.37 -0.7 342,282 - HMPREF1181_RS14085 0.37 -2.5 342,282 - HMPREF1181_RS14085 0.37 -1.1 342,298 + HMPREF1181_RS14085 0.39 -3.5 342,361 - HMPREF1181_RS14085 0.43 -3.6 342,411 + HMPREF1181_RS14085 0.47 -2.7 342,463 + HMPREF1181_RS14085 0.52 -1.7 342,555 - HMPREF1181_RS14085 0.59 -1.2 342,602 + HMPREF1181_RS14085 0.62 -0.8 342,668 + HMPREF1181_RS14085 0.68 -0.7 342,673 - HMPREF1181_RS14085 0.68 -4.3 342,783 + HMPREF1181_RS14085 0.77 -2.9 342,784 - HMPREF1181_RS14085 0.77 +0.5 342,862 + HMPREF1181_RS14085 0.83 -1.2 342,863 - HMPREF1181_RS14085 0.83 -2.6 342,888 + HMPREF1181_RS14085 0.85 -2.6 343,012 + -1.2 343,013 - -1.7 343,058 - -3.8 343,069 + +0.9 343,070 - -2.4 343,070 - -4.8 343,089 - -2.3 343,286 - HMPREF1181_RS14090 0.43 -0.2 343,286 - HMPREF1181_RS14090 0.43 -2.5 343,346 + HMPREF1181_RS14090 0.56 -1.7 343,353 + HMPREF1181_RS14090 0.57 -2.5 343,353 + HMPREF1181_RS14090 0.57 +1.5 343,353 + HMPREF1181_RS14090 0.57 -4.5 343,354 - HMPREF1181_RS14090 0.57 -2.1 343,354 - HMPREF1181_RS14090 0.57 -1.0 343,367 - HMPREF1181_RS14090 0.60 -2.0 343,454 - HMPREF1181_RS14090 0.78 -0.1 343,457 + HMPREF1181_RS14090 0.78 -1.7 343,596 + -1.6 343,668 - -0.0 343,761 - HMPREF1181_RS14095 0.11 -0.4 343,925 + HMPREF1181_RS14095 0.36 +0.2 343,963 + HMPREF1181_RS14095 0.42 -0.5 344,035 + HMPREF1181_RS14095 0.53 +1.5 344,036 - HMPREF1181_RS14095 0.53 +1.1 344,042 - HMPREF1181_RS14095 0.54 +0.9 344,081 + HMPREF1181_RS14095 0.60 +1.7
Or see this region's nucleotide sequence