Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS05645

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS05630 and HMPREF1181_RS05635 are separated by 157 nucleotidesHMPREF1181_RS05635 and HMPREF1181_RS05640 are separated by 25 nucleotidesHMPREF1181_RS05640 and HMPREF1181_RS05645 are separated by 14 nucleotidesHMPREF1181_RS05645 and HMPREF1181_RS05650 are separated by 200 nucleotides HMPREF1181_RS05630: HMPREF1181_RS05630 - excinuclease ABC subunit UvrA, at 434,670 to 437,441 _RS05630 HMPREF1181_RS05635: HMPREF1181_RS05635 - hypothetical protein, at 437,599 to 438,078 _RS05635 HMPREF1181_RS05640: HMPREF1181_RS05640 - hypothetical protein, at 438,104 to 438,328 _RS05640 HMPREF1181_RS05645: HMPREF1181_RS05645 - carbon starvation protein A, at 438,343 to 439,758 _RS05645 HMPREF1181_RS05650: HMPREF1181_RS05650 - family 10 glycosylhydrolase, at 439,959 to 441,413 _RS05650 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.356 kb on - strandat 437.406 kb on + strandat 437.439 kb on + strandat 437.473 kb on + strandat 437.484 kb on - strandat 437.762 kb on + strand, within HMPREF1181_RS05635at 437.794 kb on + strand, within HMPREF1181_RS05635at 437.813 kb on + strand, within HMPREF1181_RS05635at 437.841 kb on - strand, within HMPREF1181_RS05635at 437.868 kb on + strand, within HMPREF1181_RS05635at 437.958 kb on + strand, within HMPREF1181_RS05635at 438.106 kb on - strandat 438.121 kb on + strandat 438.185 kb on + strand, within HMPREF1181_RS05640at 438.213 kb on - strand, within HMPREF1181_RS05640at 438.217 kb on - strand, within HMPREF1181_RS05640at 438.283 kb on + strand, within HMPREF1181_RS05640at 438.284 kb on - strand, within HMPREF1181_RS05640at 438.380 kb on - strandat 438.464 kb on + strandat 438.464 kb on + strandat 438.464 kb on + strandat 438.465 kb on - strandat 438.465 kb on - strandat 438.604 kb on + strand, within HMPREF1181_RS05645at 438.604 kb on + strand, within HMPREF1181_RS05645at 438.605 kb on - strand, within HMPREF1181_RS05645at 438.605 kb on - strand, within HMPREF1181_RS05645at 438.638 kb on + strand, within HMPREF1181_RS05645at 438.682 kb on - strand, within HMPREF1181_RS05645at 438.682 kb on - strand, within HMPREF1181_RS05645at 438.683 kb on + strand, within HMPREF1181_RS05645at 438.684 kb on - strand, within HMPREF1181_RS05645at 438.918 kb on + strand, within HMPREF1181_RS05645at 438.958 kb on + strand, within HMPREF1181_RS05645at 438.958 kb on + strand, within HMPREF1181_RS05645at 439.070 kb on - strand, within HMPREF1181_RS05645at 439.146 kb on - strand, within HMPREF1181_RS05645at 439.204 kb on + strand, within HMPREF1181_RS05645at 439.204 kb on + strand, within HMPREF1181_RS05645at 439.205 kb on - strand, within HMPREF1181_RS05645at 439.222 kb on - strand, within HMPREF1181_RS05645at 439.246 kb on + strand, within HMPREF1181_RS05645at 439.246 kb on + strand, within HMPREF1181_RS05645at 439.247 kb on - strand, within HMPREF1181_RS05645at 439.247 kb on - strand, within HMPREF1181_RS05645at 439.247 kb on - strand, within HMPREF1181_RS05645at 439.248 kb on + strand, within HMPREF1181_RS05645at 439.251 kb on - strand, within HMPREF1181_RS05645at 439.371 kb on + strand, within HMPREF1181_RS05645at 439.396 kb on - strand, within HMPREF1181_RS05645at 439.498 kb on - strand, within HMPREF1181_RS05645at 439.511 kb on - strand, within HMPREF1181_RS05645at 439.521 kb on - strand, within HMPREF1181_RS05645at 439.564 kb on - strand, within HMPREF1181_RS05645at 439.650 kb on + strandat 439.653 kb on + strandat 439.707 kb on - strandat 439.716 kb on - strandat 439.746 kb on + strandat 439.747 kb on - strandat 439.777 kb on - strandat 439.779 kb on - strandat 439.805 kb on + strandat 439.805 kb on + strandat 439.806 kb on - strandat 439.808 kb on - strandat 439.858 kb on + strandat 439.859 kb on - strandat 439.878 kb on + strandat 439.879 kb on - strandat 439.881 kb on - strandat 439.938 kb on + strandat 439.976 kb on + strandat 439.979 kb on - strandat 439.982 kb on - strandat 439.984 kb on + strandat 439.986 kb on + strandat 439.986 kb on + strandat 439.986 kb on + strandat 440.134 kb on + strand, within HMPREF1181_RS05650at 440.135 kb on - strand, within HMPREF1181_RS05650at 440.212 kb on - strand, within HMPREF1181_RS05650at 440.234 kb on + strand, within HMPREF1181_RS05650at 440.235 kb on - strand, within HMPREF1181_RS05650at 440.235 kb on - strand, within HMPREF1181_RS05650at 440.414 kb on + strand, within HMPREF1181_RS05650at 440.423 kb on - strand, within HMPREF1181_RS05650at 440.427 kb on + strand, within HMPREF1181_RS05650at 440.427 kb on + strand, within HMPREF1181_RS05650at 440.430 kb on - strand, within HMPREF1181_RS05650at 440.430 kb on - strand, within HMPREF1181_RS05650at 440.476 kb on - strand, within HMPREF1181_RS05650at 440.512 kb on - strand, within HMPREF1181_RS05650at 440.539 kb on - strand, within HMPREF1181_RS05650at 440.580 kb on + strand, within HMPREF1181_RS05650at 440.580 kb on + strand, within HMPREF1181_RS05650at 440.580 kb on + strand, within HMPREF1181_RS05650at 440.580 kb on + strand, within HMPREF1181_RS05650at 440.580 kb on + strand, within HMPREF1181_RS05650at 440.586 kb on + strand, within HMPREF1181_RS05650at 440.587 kb on - strand, within HMPREF1181_RS05650at 440.596 kb on - strand, within HMPREF1181_RS05650at 440.636 kb on + strand, within HMPREF1181_RS05650at 440.647 kb on + strand, within HMPREF1181_RS05650at 440.648 kb on - strand, within HMPREF1181_RS05650at 440.661 kb on + strand, within HMPREF1181_RS05650at 440.663 kb on + strand, within HMPREF1181_RS05650

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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437,356 - +0.4
437,406 + +0.7
437,439 + -0.9
437,473 + +0.8
437,484 - -1.2
437,762 + HMPREF1181_RS05635 0.34 +0.2
437,794 + HMPREF1181_RS05635 0.41 -0.2
437,813 + HMPREF1181_RS05635 0.45 +0.7
437,841 - HMPREF1181_RS05635 0.50 +0.5
437,868 + HMPREF1181_RS05635 0.56 +0.2
437,958 + HMPREF1181_RS05635 0.75 +1.0
438,106 - -0.5
438,121 + -0.0
438,185 + HMPREF1181_RS05640 0.36 +0.5
438,213 - HMPREF1181_RS05640 0.48 -0.3
438,217 - HMPREF1181_RS05640 0.50 +1.0
438,283 + HMPREF1181_RS05640 0.80 -0.7
438,284 - HMPREF1181_RS05640 0.80 +0.4
438,380 - -0.1
438,464 + -1.2
438,464 + +0.2
438,464 + +0.4
438,465 - -1.7
438,465 - -0.8
438,604 + HMPREF1181_RS05645 0.18 -2.0
438,604 + HMPREF1181_RS05645 0.18 +0.5
438,605 - HMPREF1181_RS05645 0.19 -0.5
438,605 - HMPREF1181_RS05645 0.19 -0.3
438,638 + HMPREF1181_RS05645 0.21 +0.6
438,682 - HMPREF1181_RS05645 0.24 -1.3
438,682 - HMPREF1181_RS05645 0.24 -1.3
438,683 + HMPREF1181_RS05645 0.24 +0.3
438,684 - HMPREF1181_RS05645 0.24 -1.8
438,918 + HMPREF1181_RS05645 0.41 -2.1
438,958 + HMPREF1181_RS05645 0.43 +1.2
438,958 + HMPREF1181_RS05645 0.43 -0.4
439,070 - HMPREF1181_RS05645 0.51 -2.5
439,146 - HMPREF1181_RS05645 0.57 +0.3
439,204 + HMPREF1181_RS05645 0.61 +0.9
439,204 + HMPREF1181_RS05645 0.61 +1.1
439,205 - HMPREF1181_RS05645 0.61 -1.8
439,222 - HMPREF1181_RS05645 0.62 +0.3
439,246 + HMPREF1181_RS05645 0.64 -0.2
439,246 + HMPREF1181_RS05645 0.64 +1.6
439,247 - HMPREF1181_RS05645 0.64 -0.3
439,247 - HMPREF1181_RS05645 0.64 -1.8
439,247 - HMPREF1181_RS05645 0.64 -1.5
439,248 + HMPREF1181_RS05645 0.64 +0.1
439,251 - HMPREF1181_RS05645 0.64 -0.3
439,371 + HMPREF1181_RS05645 0.73 +0.1
439,396 - HMPREF1181_RS05645 0.74 -0.5
439,498 - HMPREF1181_RS05645 0.82 +0.3
439,511 - HMPREF1181_RS05645 0.82 +0.2
439,521 - HMPREF1181_RS05645 0.83 -2.0
439,564 - HMPREF1181_RS05645 0.86 +0.3
439,650 + -0.8
439,653 + -1.3
439,707 - -1.7
439,716 - -1.4
439,746 + -1.6
439,747 - -0.7
439,777 - -0.3
439,779 - -0.9
439,805 + +0.2
439,805 + +0.8
439,806 - -1.0
439,808 - -1.3
439,858 + +0.3
439,859 - -0.0
439,878 + -0.8
439,879 - -1.3
439,881 - -1.5
439,938 + +0.9
439,976 + -0.1
439,979 - -2.0
439,982 - +1.7
439,984 + +0.7
439,986 + -0.6
439,986 + +0.5
439,986 + -0.7
440,134 + HMPREF1181_RS05650 0.12 -1.9
440,135 - HMPREF1181_RS05650 0.12 -1.4
440,212 - HMPREF1181_RS05650 0.17 +0.2
440,234 + HMPREF1181_RS05650 0.19 +0.8
440,235 - HMPREF1181_RS05650 0.19 -0.5
440,235 - HMPREF1181_RS05650 0.19 -0.2
440,414 + HMPREF1181_RS05650 0.31 -1.9
440,423 - HMPREF1181_RS05650 0.32 -0.3
440,427 + HMPREF1181_RS05650 0.32 -2.1
440,427 + HMPREF1181_RS05650 0.32 +1.1
440,430 - HMPREF1181_RS05650 0.32 +0.8
440,430 - HMPREF1181_RS05650 0.32 -0.9
440,476 - HMPREF1181_RS05650 0.36 -0.6
440,512 - HMPREF1181_RS05650 0.38 -3.0
440,539 - HMPREF1181_RS05650 0.40 +0.9
440,580 + HMPREF1181_RS05650 0.43 -0.3
440,580 + HMPREF1181_RS05650 0.43 +0.5
440,580 + HMPREF1181_RS05650 0.43 -1.3
440,580 + HMPREF1181_RS05650 0.43 +0.8
440,580 + HMPREF1181_RS05650 0.43 +2.1
440,586 + HMPREF1181_RS05650 0.43 -1.6
440,587 - HMPREF1181_RS05650 0.43 +0.1
440,596 - HMPREF1181_RS05650 0.44 +0.8
440,636 + HMPREF1181_RS05650 0.47 -0.5
440,647 + HMPREF1181_RS05650 0.47 +0.6
440,648 - HMPREF1181_RS05650 0.47 -1.6
440,661 + HMPREF1181_RS05650 0.48 -1.2
440,663 + HMPREF1181_RS05650 0.48 +1.1

Or see this region's nucleotide sequence