Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS02260

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS02255 and HMPREF1181_RS02260 are separated by 198 nucleotidesHMPREF1181_RS02260 and HMPREF1181_RS02265 are separated by 88 nucleotides HMPREF1181_RS02255: HMPREF1181_RS02255 - hypothetical protein, at 556,367 to 559,195 _RS02255 HMPREF1181_RS02260: HMPREF1181_RS02260 - WbqC family protein, at 559,394 to 560,035 _RS02260 HMPREF1181_RS02265: HMPREF1181_RS02265 - signal peptidase I, at 560,124 to 561,062 _RS02265 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2at 558.395 kb on + strand, within HMPREF1181_RS02255at 558.395 kb on + strand, within HMPREF1181_RS02255at 558.396 kb on - strand, within HMPREF1181_RS02255at 558.411 kb on + strand, within HMPREF1181_RS02255at 558.412 kb on - strand, within HMPREF1181_RS02255at 558.412 kb on - strand, within HMPREF1181_RS02255at 558.412 kb on - strand, within HMPREF1181_RS02255at 558.414 kb on + strand, within HMPREF1181_RS02255at 558.414 kb on + strand, within HMPREF1181_RS02255at 558.414 kb on + strand, within HMPREF1181_RS02255at 558.415 kb on - strand, within HMPREF1181_RS02255at 558.415 kb on - strand, within HMPREF1181_RS02255at 558.415 kb on - strand, within HMPREF1181_RS02255at 558.418 kb on + strand, within HMPREF1181_RS02255at 558.435 kb on + strand, within HMPREF1181_RS02255at 558.468 kb on - strand, within HMPREF1181_RS02255at 558.473 kb on - strand, within HMPREF1181_RS02255at 558.514 kb on - strand, within HMPREF1181_RS02255at 558.514 kb on - strand, within HMPREF1181_RS02255at 558.516 kb on - strand, within HMPREF1181_RS02255at 558.538 kb on + strand, within HMPREF1181_RS02255at 558.543 kb on - strand, within HMPREF1181_RS02255at 558.545 kb on + strand, within HMPREF1181_RS02255at 558.546 kb on - strand, within HMPREF1181_RS02255at 558.549 kb on + strand, within HMPREF1181_RS02255at 558.550 kb on - strand, within HMPREF1181_RS02255at 558.575 kb on - strand, within HMPREF1181_RS02255at 558.614 kb on + strand, within HMPREF1181_RS02255at 558.615 kb on - strand, within HMPREF1181_RS02255at 558.615 kb on - strand, within HMPREF1181_RS02255at 558.646 kb on - strand, within HMPREF1181_RS02255at 558.657 kb on + strand, within HMPREF1181_RS02255at 558.748 kb on - strand, within HMPREF1181_RS02255at 558.758 kb on - strand, within HMPREF1181_RS02255at 558.800 kb on + strand, within HMPREF1181_RS02255at 558.801 kb on - strand, within HMPREF1181_RS02255at 558.803 kb on - strand, within HMPREF1181_RS02255at 558.899 kb on + strand, within HMPREF1181_RS02255at 558.922 kb on - strandat 558.995 kb on + strandat 558.995 kb on + strandat 558.996 kb on - strandat 559.035 kb on + strandat 559.040 kb on - strandat 559.225 kb on - strandat 559.228 kb on - strandat 559.257 kb on - strandat 559.273 kb on - strandat 559.273 kb on - strandat 559.321 kb on - strandat 559.325 kb on - strandat 559.353 kb on + strandat 559.355 kb on + strandat 559.400 kb on + strandat 559.421 kb on + strandat 559.424 kb on + strandat 559.512 kb on + strand, within HMPREF1181_RS02260at 559.515 kb on + strand, within HMPREF1181_RS02260at 559.570 kb on + strand, within HMPREF1181_RS02260at 559.571 kb on - strand, within HMPREF1181_RS02260at 559.601 kb on - strand, within HMPREF1181_RS02260at 559.601 kb on - strand, within HMPREF1181_RS02260at 559.644 kb on - strand, within HMPREF1181_RS02260at 559.644 kb on - strand, within HMPREF1181_RS02260at 559.650 kb on - strand, within HMPREF1181_RS02260at 559.717 kb on - strand, within HMPREF1181_RS02260at 559.741 kb on - strand, within HMPREF1181_RS02260at 559.741 kb on - strand, within HMPREF1181_RS02260at 559.759 kb on + strand, within HMPREF1181_RS02260at 559.759 kb on + strand, within HMPREF1181_RS02260at 559.767 kb on + strand, within HMPREF1181_RS02260at 559.767 kb on + strand, within HMPREF1181_RS02260at 559.768 kb on - strand, within HMPREF1181_RS02260at 559.936 kb on + strand, within HMPREF1181_RS02260at 559.937 kb on - strand, within HMPREF1181_RS02260at 559.961 kb on + strand, within HMPREF1181_RS02260at 559.962 kb on - strand, within HMPREF1181_RS02260at 559.993 kb on - strandat 559.993 kb on - strandat 559.993 kb on - strandat 560.050 kb on + strandat 560.088 kb on + strandat 560.294 kb on - strand, within HMPREF1181_RS02265at 560.296 kb on + strand, within HMPREF1181_RS02265at 560.296 kb on + strand, within HMPREF1181_RS02265at 560.311 kb on + strand, within HMPREF1181_RS02265at 560.337 kb on + strand, within HMPREF1181_RS02265at 560.337 kb on + strand, within HMPREF1181_RS02265at 560.337 kb on + strand, within HMPREF1181_RS02265at 560.341 kb on + strand, within HMPREF1181_RS02265at 560.342 kb on - strand, within HMPREF1181_RS02265at 560.342 kb on - strand, within HMPREF1181_RS02265at 560.349 kb on - strand, within HMPREF1181_RS02265at 560.349 kb on - strand, within HMPREF1181_RS02265at 560.424 kb on + strand, within HMPREF1181_RS02265at 560.425 kb on - strand, within HMPREF1181_RS02265at 560.539 kb on + strand, within HMPREF1181_RS02265at 560.540 kb on - strand, within HMPREF1181_RS02265at 560.579 kb on + strand, within HMPREF1181_RS02265at 560.592 kb on + strand, within HMPREF1181_RS02265at 560.595 kb on + strand, within HMPREF1181_RS02265at 560.659 kb on + strand, within HMPREF1181_RS02265at 560.663 kb on + strand, within HMPREF1181_RS02265at 560.663 kb on + strand, within HMPREF1181_RS02265at 560.664 kb on - strand, within HMPREF1181_RS02265at 560.664 kb on - strand, within HMPREF1181_RS02265at 560.664 kb on - strand, within HMPREF1181_RS02265at 560.664 kb on - strand, within HMPREF1181_RS02265at 560.665 kb on + strand, within HMPREF1181_RS02265at 560.725 kb on - strand, within HMPREF1181_RS02265at 560.735 kb on + strand, within HMPREF1181_RS02265at 560.767 kb on + strand, within HMPREF1181_RS02265at 560.767 kb on + strand, within HMPREF1181_RS02265at 560.767 kb on + strand, within HMPREF1181_RS02265at 560.820 kb on + strand, within HMPREF1181_RS02265at 560.974 kb on + strandat 561.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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558,395 + HMPREF1181_RS02255 0.72 -0.8
558,395 + HMPREF1181_RS02255 0.72 +0.4
558,396 - HMPREF1181_RS02255 0.72 -0.1
558,411 + HMPREF1181_RS02255 0.72 -0.1
558,412 - HMPREF1181_RS02255 0.72 -0.7
558,412 - HMPREF1181_RS02255 0.72 -0.0
558,412 - HMPREF1181_RS02255 0.72 +0.2
558,414 + HMPREF1181_RS02255 0.72 +0.8
558,414 + HMPREF1181_RS02255 0.72 -2.2
558,414 + HMPREF1181_RS02255 0.72 -0.1
558,415 - HMPREF1181_RS02255 0.72 +0.3
558,415 - HMPREF1181_RS02255 0.72 -1.5
558,415 - HMPREF1181_RS02255 0.72 +0.4
558,418 + HMPREF1181_RS02255 0.72 +0.4
558,435 + HMPREF1181_RS02255 0.73 -0.4
558,468 - HMPREF1181_RS02255 0.74 +1.1
558,473 - HMPREF1181_RS02255 0.74 -1.0
558,514 - HMPREF1181_RS02255 0.76 +1.4
558,514 - HMPREF1181_RS02255 0.76 +0.4
558,516 - HMPREF1181_RS02255 0.76 -0.3
558,538 + HMPREF1181_RS02255 0.77 -1.3
558,543 - HMPREF1181_RS02255 0.77 +0.3
558,545 + HMPREF1181_RS02255 0.77 +0.9
558,546 - HMPREF1181_RS02255 0.77 -0.6
558,549 + HMPREF1181_RS02255 0.77 -1.6
558,550 - HMPREF1181_RS02255 0.77 +1.2
558,575 - HMPREF1181_RS02255 0.78 -1.3
558,614 + HMPREF1181_RS02255 0.79 -0.3
558,615 - HMPREF1181_RS02255 0.79 -0.1
558,615 - HMPREF1181_RS02255 0.79 -0.1
558,646 - HMPREF1181_RS02255 0.81 -1.3
558,657 + HMPREF1181_RS02255 0.81 +2.4
558,748 - HMPREF1181_RS02255 0.84 -1.0
558,758 - HMPREF1181_RS02255 0.85 +0.6
558,800 + HMPREF1181_RS02255 0.86 +0.1
558,801 - HMPREF1181_RS02255 0.86 -1.5
558,803 - HMPREF1181_RS02255 0.86 -1.4
558,899 + HMPREF1181_RS02255 0.90 -1.3
558,922 - +0.0
558,995 + -1.0
558,995 + +0.6
558,996 - +0.3
559,035 + -0.8
559,040 - -0.4
559,225 - +1.1
559,228 - -0.6
559,257 - -0.6
559,273 - +0.3
559,273 - -0.0
559,321 - +0.1
559,325 - +1.1
559,353 + -0.7
559,355 + -0.7
559,400 + -0.5
559,421 + -0.6
559,424 + +0.8
559,512 + HMPREF1181_RS02260 0.18 -1.4
559,515 + HMPREF1181_RS02260 0.19 -0.6
559,570 + HMPREF1181_RS02260 0.27 +0.9
559,571 - HMPREF1181_RS02260 0.28 +0.1
559,601 - HMPREF1181_RS02260 0.32 +0.5
559,601 - HMPREF1181_RS02260 0.32 +0.6
559,644 - HMPREF1181_RS02260 0.39 -1.4
559,644 - HMPREF1181_RS02260 0.39 +1.0
559,650 - HMPREF1181_RS02260 0.40 -0.5
559,717 - HMPREF1181_RS02260 0.50 +0.9
559,741 - HMPREF1181_RS02260 0.54 -1.1
559,741 - HMPREF1181_RS02260 0.54 -0.0
559,759 + HMPREF1181_RS02260 0.57 -1.3
559,759 + HMPREF1181_RS02260 0.57 +1.0
559,767 + HMPREF1181_RS02260 0.58 +0.3
559,767 + HMPREF1181_RS02260 0.58 -0.5
559,768 - HMPREF1181_RS02260 0.58 +0.0
559,936 + HMPREF1181_RS02260 0.84 -1.3
559,937 - HMPREF1181_RS02260 0.85 +0.4
559,961 + HMPREF1181_RS02260 0.88 -0.4
559,962 - HMPREF1181_RS02260 0.88 -1.4
559,993 - -1.8
559,993 - +0.2
559,993 - +0.1
560,050 + -0.6
560,088 + +0.1
560,294 - HMPREF1181_RS02265 0.18 -0.4
560,296 + HMPREF1181_RS02265 0.18 -1.5
560,296 + HMPREF1181_RS02265 0.18 -1.0
560,311 + HMPREF1181_RS02265 0.20 -2.0
560,337 + HMPREF1181_RS02265 0.23 +1.2
560,337 + HMPREF1181_RS02265 0.23 +0.5
560,337 + HMPREF1181_RS02265 0.23 -0.1
560,341 + HMPREF1181_RS02265 0.23 -0.7
560,342 - HMPREF1181_RS02265 0.23 -0.4
560,342 - HMPREF1181_RS02265 0.23 +0.7
560,349 - HMPREF1181_RS02265 0.24 -0.5
560,349 - HMPREF1181_RS02265 0.24 -1.1
560,424 + HMPREF1181_RS02265 0.32 -0.1
560,425 - HMPREF1181_RS02265 0.32 -0.2
560,539 + HMPREF1181_RS02265 0.44 -1.4
560,540 - HMPREF1181_RS02265 0.44 +0.5
560,579 + HMPREF1181_RS02265 0.48 -0.4
560,592 + HMPREF1181_RS02265 0.50 -1.2
560,595 + HMPREF1181_RS02265 0.50 -2.5
560,659 + HMPREF1181_RS02265 0.57 -0.9
560,663 + HMPREF1181_RS02265 0.57 -0.5
560,663 + HMPREF1181_RS02265 0.57 -1.1
560,664 - HMPREF1181_RS02265 0.58 +0.9
560,664 - HMPREF1181_RS02265 0.58 -1.1
560,664 - HMPREF1181_RS02265 0.58 -0.5
560,664 - HMPREF1181_RS02265 0.58 +2.1
560,665 + HMPREF1181_RS02265 0.58 -1.4
560,725 - HMPREF1181_RS02265 0.64 -0.0
560,735 + HMPREF1181_RS02265 0.65 +0.5
560,767 + HMPREF1181_RS02265 0.68 -0.8
560,767 + HMPREF1181_RS02265 0.68 -1.2
560,767 + HMPREF1181_RS02265 0.68 -1.3
560,820 + HMPREF1181_RS02265 0.74 -1.6
560,974 + -0.9
561,016 - -1.3

Or see this region's nucleotide sequence