Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS01520

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS01510 and HMPREF1181_RS01515 overlap by 8 nucleotidesHMPREF1181_RS01515 and HMPREF1181_RS01520 are separated by 37 nucleotidesHMPREF1181_RS01520 and HMPREF1181_RS01525 are separated by 24 nucleotidesHMPREF1181_RS01525 and HMPREF1181_RS01530 are separated by 142 nucleotides HMPREF1181_RS01510: HMPREF1181_RS01510 - DNA-protecting protein DprA, at 366,534 to 367,652 _RS01510 HMPREF1181_RS01515: HMPREF1181_RS01515 - acyl-CoA thioesterase, at 367,645 to 368,052 _RS01515 HMPREF1181_RS01520: HMPREF1181_RS01520 - U32 family peptidase, at 368,090 to 369,382 _RS01520 HMPREF1181_RS01525: HMPREF1181_RS01525 - DUF2059 domain-containing protein, at 369,407 to 369,871 _RS01525 HMPREF1181_RS01530: HMPREF1181_RS01530 - tRNA dihydrouridine synthase DusB, at 370,014 to 370,991 _RS01530 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.103 kb on - strand, within HMPREF1181_RS01510at 367.106 kb on + strand, within HMPREF1181_RS01510at 367.107 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.146 kb on - strand, within HMPREF1181_RS01510at 367.206 kb on + strand, within HMPREF1181_RS01510at 367.298 kb on + strand, within HMPREF1181_RS01510at 367.299 kb on - strand, within HMPREF1181_RS01510at 367.299 kb on - strand, within HMPREF1181_RS01510at 367.407 kb on - strand, within HMPREF1181_RS01510at 367.407 kb on - strand, within HMPREF1181_RS01510at 367.487 kb on + strand, within HMPREF1181_RS01510at 367.533 kb on - strand, within HMPREF1181_RS01510at 367.573 kb on - strandat 367.617 kb on - strandat 367.721 kb on - strand, within HMPREF1181_RS01515at 367.752 kb on + strand, within HMPREF1181_RS01515at 367.782 kb on - strand, within HMPREF1181_RS01515at 367.782 kb on - strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.790 kb on + strand, within HMPREF1181_RS01515at 367.791 kb on - strand, within HMPREF1181_RS01515at 367.866 kb on + strand, within HMPREF1181_RS01515at 367.867 kb on - strand, within HMPREF1181_RS01515at 367.953 kb on + strand, within HMPREF1181_RS01515at 368.040 kb on - strandat 368.046 kb on - strandat 368.053 kb on + strandat 368.058 kb on + strandat 368.092 kb on - strandat 368.177 kb on + strandat 368.177 kb on + strandat 368.177 kb on + strandat 368.178 kb on - strandat 368.260 kb on + strand, within HMPREF1181_RS01520at 368.365 kb on - strand, within HMPREF1181_RS01520at 368.415 kb on + strand, within HMPREF1181_RS01520at 368.510 kb on + strand, within HMPREF1181_RS01520at 368.511 kb on - strand, within HMPREF1181_RS01520at 368.525 kb on - strand, within HMPREF1181_RS01520at 368.561 kb on - strand, within HMPREF1181_RS01520at 368.561 kb on - strand, within HMPREF1181_RS01520at 368.578 kb on + strand, within HMPREF1181_RS01520at 368.686 kb on + strand, within HMPREF1181_RS01520at 368.686 kb on + strand, within HMPREF1181_RS01520at 368.687 kb on - strand, within HMPREF1181_RS01520at 368.691 kb on + strand, within HMPREF1181_RS01520at 368.691 kb on + strand, within HMPREF1181_RS01520at 368.702 kb on + strand, within HMPREF1181_RS01520at 368.765 kb on - strand, within HMPREF1181_RS01520at 368.863 kb on + strand, within HMPREF1181_RS01520at 368.863 kb on + strand, within HMPREF1181_RS01520at 368.867 kb on + strand, within HMPREF1181_RS01520at 368.867 kb on + strand, within HMPREF1181_RS01520at 368.982 kb on + strand, within HMPREF1181_RS01520at 369.057 kb on + strand, within HMPREF1181_RS01520at 369.098 kb on - strand, within HMPREF1181_RS01520at 369.143 kb on - strand, within HMPREF1181_RS01520at 369.153 kb on + strand, within HMPREF1181_RS01520at 369.157 kb on + strand, within HMPREF1181_RS01520at 369.163 kb on + strand, within HMPREF1181_RS01520at 369.168 kb on - strand, within HMPREF1181_RS01520at 369.285 kb on + strandat 369.373 kb on + strandat 369.388 kb on - strandat 369.412 kb on + strandat 369.542 kb on + strand, within HMPREF1181_RS01525at 369.544 kb on - strand, within HMPREF1181_RS01525at 369.603 kb on + strand, within HMPREF1181_RS01525at 369.603 kb on + strand, within HMPREF1181_RS01525at 369.604 kb on - strand, within HMPREF1181_RS01525at 369.604 kb on - strand, within HMPREF1181_RS01525at 369.604 kb on - strand, within HMPREF1181_RS01525at 369.875 kb on + strandat 369.909 kb on - strandat 369.934 kb on + strandat 369.961 kb on + strandat 370.029 kb on - strandat 370.030 kb on + strandat 370.129 kb on - strand, within HMPREF1181_RS01530at 370.223 kb on - strand, within HMPREF1181_RS01530at 370.228 kb on + strand, within HMPREF1181_RS01530at 370.228 kb on + strand, within HMPREF1181_RS01530at 370.229 kb on - strand, within HMPREF1181_RS01530at 370.250 kb on + strand, within HMPREF1181_RS01530at 370.294 kb on + strand, within HMPREF1181_RS01530at 370.295 kb on - strand, within HMPREF1181_RS01530at 370.368 kb on - strand, within HMPREF1181_RS01530

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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367,103 - HMPREF1181_RS01510 0.51 -0.8
367,106 + HMPREF1181_RS01510 0.51 -0.5
367,107 - HMPREF1181_RS01510 0.51 -0.9
367,146 - HMPREF1181_RS01510 0.55 -0.4
367,146 - HMPREF1181_RS01510 0.55 +0.4
367,146 - HMPREF1181_RS01510 0.55 +0.3
367,146 - HMPREF1181_RS01510 0.55 +1.0
367,206 + HMPREF1181_RS01510 0.60 -0.7
367,298 + HMPREF1181_RS01510 0.68 +1.3
367,299 - HMPREF1181_RS01510 0.68 -0.7
367,299 - HMPREF1181_RS01510 0.68 +0.4
367,407 - HMPREF1181_RS01510 0.78 -0.0
367,407 - HMPREF1181_RS01510 0.78 +0.2
367,487 + HMPREF1181_RS01510 0.85 +0.3
367,533 - HMPREF1181_RS01510 0.89 -1.3
367,573 - -2.1
367,617 - -0.7
367,721 - HMPREF1181_RS01515 0.19 +1.4
367,752 + HMPREF1181_RS01515 0.26 -0.3
367,782 - HMPREF1181_RS01515 0.34 +0.2
367,782 - HMPREF1181_RS01515 0.34 -0.3
367,790 + HMPREF1181_RS01515 0.36 +1.4
367,790 + HMPREF1181_RS01515 0.36 +0.9
367,790 + HMPREF1181_RS01515 0.36 +0.4
367,791 - HMPREF1181_RS01515 0.36 +1.9
367,866 + HMPREF1181_RS01515 0.54 -0.3
367,867 - HMPREF1181_RS01515 0.54 +0.5
367,953 + HMPREF1181_RS01515 0.75 -0.7
368,040 - +0.9
368,046 - -0.8
368,053 + -0.6
368,058 + +0.5
368,092 - +0.6
368,177 + +0.9
368,177 + -0.1
368,177 + -1.0
368,178 - -0.9
368,260 + HMPREF1181_RS01520 0.13 +0.4
368,365 - HMPREF1181_RS01520 0.21 +1.0
368,415 + HMPREF1181_RS01520 0.25 +1.1
368,510 + HMPREF1181_RS01520 0.32 +0.4
368,511 - HMPREF1181_RS01520 0.33 +1.1
368,525 - HMPREF1181_RS01520 0.34 -0.7
368,561 - HMPREF1181_RS01520 0.36 +0.2
368,561 - HMPREF1181_RS01520 0.36 -1.1
368,578 + HMPREF1181_RS01520 0.38 +0.4
368,686 + HMPREF1181_RS01520 0.46 +1.6
368,686 + HMPREF1181_RS01520 0.46 -0.5
368,687 - HMPREF1181_RS01520 0.46 -1.3
368,691 + HMPREF1181_RS01520 0.46 +0.7
368,691 + HMPREF1181_RS01520 0.46 +0.9
368,702 + HMPREF1181_RS01520 0.47 -0.8
368,765 - HMPREF1181_RS01520 0.52 -0.3
368,863 + HMPREF1181_RS01520 0.60 -0.5
368,863 + HMPREF1181_RS01520 0.60 -0.6
368,867 + HMPREF1181_RS01520 0.60 +1.3
368,867 + HMPREF1181_RS01520 0.60 +0.9
368,982 + HMPREF1181_RS01520 0.69 +0.4
369,057 + HMPREF1181_RS01520 0.75 +2.1
369,098 - HMPREF1181_RS01520 0.78 +0.7
369,143 - HMPREF1181_RS01520 0.81 +0.7
369,153 + HMPREF1181_RS01520 0.82 +1.2
369,157 + HMPREF1181_RS01520 0.83 -0.6
369,163 + HMPREF1181_RS01520 0.83 +0.9
369,168 - HMPREF1181_RS01520 0.83 +0.1
369,285 + -1.2
369,373 + -0.5
369,388 - +0.8
369,412 + +0.0
369,542 + HMPREF1181_RS01525 0.29 -1.4
369,544 - HMPREF1181_RS01525 0.29 +1.4
369,603 + HMPREF1181_RS01525 0.42 +0.0
369,603 + HMPREF1181_RS01525 0.42 +1.8
369,604 - HMPREF1181_RS01525 0.42 +0.9
369,604 - HMPREF1181_RS01525 0.42 -0.7
369,604 - HMPREF1181_RS01525 0.42 -0.3
369,875 + +0.1
369,909 - +0.4
369,934 + +0.4
369,961 + +0.8
370,029 - +1.1
370,030 + -0.3
370,129 - HMPREF1181_RS01530 0.12 -0.7
370,223 - HMPREF1181_RS01530 0.21 +0.1
370,228 + HMPREF1181_RS01530 0.22 +1.9
370,228 + HMPREF1181_RS01530 0.22 +1.3
370,229 - HMPREF1181_RS01530 0.22 -0.1
370,250 + HMPREF1181_RS01530 0.24 +1.1
370,294 + HMPREF1181_RS01530 0.29 -0.8
370,295 - HMPREF1181_RS01530 0.29 +1.3
370,368 - HMPREF1181_RS01530 0.36 +1.2

Or see this region's nucleotide sequence