Strain Fitness in Variovorax sp. SCN45 around GFF6912

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6911 and GFF6912 are separated by 16 nucleotidesGFF6912 and GFF6913 are separated by 131 nucleotides GFF6911 - Transcriptional regulator, LacI family, at 46,538 to 47,578 GFF6911 GFF6912 - L-sorbosone dehydrogenase, at 47,595 to 48,968 GFF6912 GFF6913 - Ser-tRNA(Ala) deacylase @ Gly-tRNA(Ala) deacylase, at 49,100 to 49,873 GFF6913 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.691 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.961 kb on + strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 46.962 kb on - strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.042 kb on + strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.043 kb on - strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.150 kb on + strand, within GFF6911at 47.151 kb on - strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.171 kb on + strand, within GFF6911at 47.172 kb on - strand, within GFF6911at 47.394 kb on - strand, within GFF6911at 47.597 kb on - strandat 47.783 kb on - strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.785 kb on + strand, within GFF6912at 47.786 kb on - strand, within GFF6912at 47.914 kb on + strand, within GFF6912at 47.915 kb on - strand, within GFF6912at 47.986 kb on + strand, within GFF6912at 47.987 kb on - strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.989 kb on + strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 47.990 kb on - strand, within GFF6912at 48.007 kb on + strand, within GFF6912at 48.008 kb on - strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.037 kb on + strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.038 kb on - strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.188 kb on + strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.189 kb on - strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.256 kb on + strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.257 kb on - strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.373 kb on + strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.374 kb on - strand, within GFF6912at 48.439 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.682 kb on + strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.683 kb on - strand, within GFF6912at 48.927 kb on + strandat 48.927 kb on + strandat 48.927 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.948 kb on + strandat 48.949 kb on - strandat 48.949 kb on - strandat 48.949 kb on - strandat 49.053 kb on + strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.054 kb on - strandat 49.088 kb on + strandat 49.089 kb on - strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.130 kb on + strandat 49.131 kb on - strandat 49.131 kb on - strandat 49.131 kb on - strandat 49.202 kb on + strand, within GFF6913at 49.202 kb on + strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.203 kb on - strand, within GFF6913at 49.502 kb on + strand, within GFF6913at 49.502 kb on + strand, within GFF6913at 49.503 kb on - strand, within GFF6913at 49.503 kb on - strand, within GFF6913at 49.503 kb on - strand, within GFF6913

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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46,691 + GFF6911 0.15 +0.1
46,961 + GFF6911 0.41 -0.1
46,961 + GFF6911 0.41 +0.1
46,961 + GFF6911 0.41 -0.7
46,961 + GFF6911 0.41 -0.6
46,962 - GFF6911 0.41 -1.6
46,962 - GFF6911 0.41 +0.3
46,962 - GFF6911 0.41 +1.1
46,962 - GFF6911 0.41 +0.6
47,042 + GFF6911 0.48 -0.9
47,042 + GFF6911 0.48 -0.3
47,042 + GFF6911 0.48 +1.7
47,042 + GFF6911 0.48 -0.8
47,043 - GFF6911 0.49 -0.3
47,043 - GFF6911 0.49 +0.2
47,043 - GFF6911 0.49 +1.5
47,043 - GFF6911 0.49 -1.7
47,043 - GFF6911 0.49 -1.1
47,043 - GFF6911 0.49 +0.2
47,043 - GFF6911 0.49 -0.6
47,150 + GFF6911 0.59 -0.4
47,150 + GFF6911 0.59 -1.1
47,150 + GFF6911 0.59 -0.5
47,150 + GFF6911 0.59 -0.1
47,150 + GFF6911 0.59 -0.1
47,150 + GFF6911 0.59 -0.2
47,150 + GFF6911 0.59 +0.3
47,150 + GFF6911 0.59 -0.9
47,150 + GFF6911 0.59 +0.0
47,150 + GFF6911 0.59 +0.7
47,151 - GFF6911 0.59 -1.9
47,171 + GFF6911 0.61 -0.1
47,171 + GFF6911 0.61 -0.7
47,171 + GFF6911 0.61 -0.2
47,171 + GFF6911 0.61 +0.4
47,171 + GFF6911 0.61 -1.7
47,172 - GFF6911 0.61 +1.2
47,394 - GFF6911 0.82 -0.5
47,597 - -0.4
47,783 - GFF6912 0.14 +0.6
47,785 + GFF6912 0.14 -0.6
47,785 + GFF6912 0.14 +0.0
47,785 + GFF6912 0.14 +0.1
47,785 + GFF6912 0.14 -0.2
47,786 - GFF6912 0.14 -0.4
47,914 + GFF6912 0.23 -0.9
47,915 - GFF6912 0.23 +0.4
47,986 + GFF6912 0.28 -0.8
47,987 - GFF6912 0.29 -0.5
47,989 + GFF6912 0.29 -2.0
47,989 + GFF6912 0.29 -0.1
47,989 + GFF6912 0.29 +0.2
47,990 - GFF6912 0.29 +2.7
47,990 - GFF6912 0.29 +0.1
47,990 - GFF6912 0.29 -0.7
47,990 - GFF6912 0.29 +0.5
47,990 - GFF6912 0.29 +0.8
47,990 - GFF6912 0.29 -0.6
47,990 - GFF6912 0.29 -1.1
47,990 - GFF6912 0.29 +0.1
47,990 - GFF6912 0.29 -1.1
47,990 - GFF6912 0.29 -1.8
47,990 - GFF6912 0.29 +2.5
47,990 - GFF6912 0.29 -2.6
48,007 + GFF6912 0.30 +0.7
48,008 - GFF6912 0.30 +0.9
48,037 + GFF6912 0.32 +0.2
48,037 + GFF6912 0.32 +0.6
48,037 + GFF6912 0.32 -0.3
48,037 + GFF6912 0.32 -0.1
48,037 + GFF6912 0.32 +0.2
48,037 + GFF6912 0.32 +0.6
48,038 - GFF6912 0.32 -0.4
48,038 - GFF6912 0.32 -0.9
48,038 - GFF6912 0.32 -0.1
48,188 + GFF6912 0.43 -0.3
48,188 + GFF6912 0.43 +0.3
48,188 + GFF6912 0.43 +0.7
48,189 - GFF6912 0.43 -0.8
48,189 - GFF6912 0.43 +0.3
48,256 + GFF6912 0.48 +0.3
48,256 + GFF6912 0.48 -0.8
48,256 + GFF6912 0.48 -0.0
48,257 - GFF6912 0.48 +0.0
48,257 - GFF6912 0.48 -0.9
48,257 - GFF6912 0.48 -0.2
48,257 - GFF6912 0.48 -0.4
48,257 - GFF6912 0.48 -0.1
48,257 - GFF6912 0.48 -1.8
48,257 - GFF6912 0.48 -0.9
48,373 + GFF6912 0.57 -1.2
48,373 + GFF6912 0.57 +0.4
48,373 + GFF6912 0.57 +0.6
48,373 + GFF6912 0.57 +1.0
48,374 - GFF6912 0.57 -1.1
48,374 - GFF6912 0.57 +0.2
48,374 - GFF6912 0.57 +1.7
48,374 - GFF6912 0.57 +0.3
48,374 - GFF6912 0.57 +0.6
48,439 + GFF6912 0.61 +0.6
48,682 + GFF6912 0.79 +0.8
48,682 + GFF6912 0.79 -0.3
48,682 + GFF6912 0.79 +0.4
48,682 + GFF6912 0.79 -0.2
48,682 + GFF6912 0.79 -0.0
48,682 + GFF6912 0.79 +0.0
48,683 - GFF6912 0.79 -0.1
48,683 - GFF6912 0.79 -0.9
48,683 - GFF6912 0.79 -1.3
48,683 - GFF6912 0.79 +0.1
48,683 - GFF6912 0.79 +0.0
48,683 - GFF6912 0.79 -0.3
48,683 - GFF6912 0.79 +0.3
48,927 + +0.6
48,927 + -0.7
48,927 + -0.8
48,948 + +1.0
48,948 + -1.0
48,948 + -0.2
48,948 + -1.6
48,948 + -0.1
48,949 - -0.5
48,949 - +0.3
48,949 - -0.1
49,053 + +0.1
49,054 - +1.0
49,054 - -0.7
49,054 - +0.5
49,054 - -0.2
49,054 - -0.8
49,088 + +0.5
49,089 - +0.6
49,130 + +0.4
49,130 + -0.6
49,130 + +0.5
49,130 + -0.6
49,130 + -0.3
49,130 + -0.3
49,130 + +0.7
49,131 - -0.3
49,131 - +0.0
49,131 - -0.1
49,202 + GFF6913 0.13 +0.7
49,202 + GFF6913 0.13 -0.6
49,203 - GFF6913 0.13 -0.6
49,203 - GFF6913 0.13 -0.7
49,203 - GFF6913 0.13 -1.5
49,502 + GFF6913 0.52 -0.2
49,502 + GFF6913 0.52 -1.6
49,503 - GFF6913 0.52 +0.2
49,503 - GFF6913 0.52 -0.9
49,503 - GFF6913 0.52 -0.5

Or see this region's nucleotide sequence