Strain Fitness in Variovorax sp. SCN45 around GFF6869

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
597	+		GFF6867	0.77	+0.4
597	+		GFF6867	0.77	+1.1
597	+		GFF6867	0.77	-0.6
597	+		GFF6867	0.77	-0.4
597	+		GFF6867	0.77	-0.1
597	+		GFF6867	0.77	+0.7
597	+		GFF6867	0.77	+0.4
597	+		GFF6867	0.77	+0.0
598	-		GFF6867	0.77	+1.3
598	-		GFF6867	0.77	-0.3
598	-		GFF6867	0.77	-0.8
649	+		GFF6867	0.84	-0.3
649	+		GFF6867	0.84	+0.7
650	-		GFF6867	0.84	-2.0
650	-		GFF6867	0.84	-0.0
650	-		GFF6867	0.84	-0.9
697	+				-0.6
697	+				+1.0
697	+				-1.3
697	+				-1.0
698	-				+0.1
727	+				-1.1
728	-				-0.0
728	-				-0.7
728	-				+0.6
825	+				-0.7
825	+				-0.5
825	+				-0.4
825	+				+0.1
825	+				-1.2
826	-				+0.1
826	-				-1.9
826	-				-0.1
840	+		GFF6868	0.12	-0.5
840	+		GFF6868	0.12	+0.1
841	-		GFF6868	0.12	-2.0
841	-		GFF6868	0.12	+3.0
841	-		GFF6868	0.12	+0.2
965	-		GFF6868	0.28	+0.1
975	+		GFF6868	0.30	+0.8
976	-		GFF6868	0.30	-0.9
976	-		GFF6868	0.30	-0.9
976	-		GFF6868	0.30	-1.3
976	-		GFF6868	0.30	-1.5
1,194	+		GFF6868	0.59	-0.8
1,195	-		GFF6868	0.59	+1.0
1,195	-		GFF6868	0.59	-1.2
1,317	+		GFF6868	0.75	+0.3
1,318	-		GFF6868	0.75	-1.5
1,318	-		GFF6868	0.75	-0.8
1,318	-		GFF6868	0.75	+2.7
1,318	-		GFF6868	0.75	-0.3
1,318	-		GFF6868	0.75	-0.0
1,413	+		GFF6868	0.88	-1.3
1,413	+		GFF6868	0.88	-1.3
1,413	+		GFF6868	0.88	-1.6
1,413	+		GFF6868	0.88	+2.2
1,413	+		GFF6868	0.88	-1.1
1,413	-		GFF6868	0.88	+0.7
1,414	-		GFF6868	0.88	-1.1
1,414	-		GFF6868	0.88	+0.4
1,414	-		GFF6868	0.88	-0.3
1,414	-		GFF6868	0.88	-0.3
1,414	-		GFF6868	0.88	+1.3
1,443	+				-0.3
1,443	+				-1.3
1,443	+				-0.5
1,443	+				-2.1
1,443	+				-0.9
1,449	+				+0.3
1,449	+				-0.5
1,450	-				-0.4
1,485	+				+0.7
1,485	+				-0.8
1,485	+				-0.9
1,486	-				+1.7
1,539	+				-0.2
1,539	+				-0.7
1,539	+				+0.7
1,539	+				-0.4
1,539	+				-0.6
1,539	+				-0.5
1,539	+				+0.1
1,539	+				+0.5
1,539	+				+0.4
1,539	+				-2.0
1,539	+				-0.5
1,540	-				+1.3
1,540	-				+0.5
1,540	-				-0.1
1,540	-				+0.4
1,540	-				-0.6
1,540	-				+0.9
1,540	-				-0.9
1,540	-				+1.7
1,540	-				-0.3
1,540	-				-0.4
1,540	-				+0.0
1,585	+		GFF6869	0.19	-0.8
1,607	+		GFF6869	0.24	-1.1
1,608	-		GFF6869	0.24	-2.1
1,608	-		GFF6869	0.24	-0.9
1,608	-		GFF6869	0.24	+0.7
1,608	-		GFF6869	0.24	+0.7
1,608	-		GFF6869	0.24	+0.7
1,610	+		GFF6869	0.25	-1.0
1,610	+		GFF6869	0.25	-1.9
1,610	+		GFF6869	0.25	-0.3
1,610	+		GFF6869	0.25	-0.2
1,610	+		GFF6869	0.25	-2.4
1,707	+		GFF6869	0.45	-0.2
1,708	-		GFF6869	0.45	-0.6
1,717	-		GFF6869	0.47	-1.9
1,840	+		GFF6869	0.73	-0.3
1,840	+		GFF6869	0.73	-1.6
1,840	+		GFF6869	0.73	+0.7
1,841	-		GFF6869	0.74	-0.6
1,841	-		GFF6869	0.74	-0.5
1,841	-		GFF6869	0.74	+0.2
1,841	-		GFF6869	0.74	-1.0
1,841	-		GFF6869	0.74	-1.0
2,013	+				-0.6
2,013	+				-0.6
2,013	+				-0.6
2,013	+				+0.7
2,013	+				-0.6
2,013	+				-0.8
2,013	+				-0.4
2,014	-				-0.6
2,014	-				-0.2
2,014	-				-1.0
2,014	-				-1.8
2,022	+				-1.1
2,022	+				+0.1
2,022	+				-0.9
2,022	+				-0.3
2,023	-				-0.3
2,023	-				-1.4
2,023	-				+1.1
2,023	-				+0.1
2,023	-				-2.2
2,023	-				+0.3
2,056	-				-0.7
2,145	+		GFF6870	0.19	-2.0
2,145	+		GFF6870	0.19	+0.2
2,145	+		GFF6870	0.19	+1.0
2,146	-		GFF6870	0.19	-2.0
2,146	-		GFF6870	0.19	+0.1
2,146	-		GFF6870	0.19	-1.8
2,163	+		GFF6870	0.21	-1.1
2,163	+		GFF6870	0.21	-0.6
2,163	+		GFF6870	0.21	-1.2
2,163	+		GFF6870	0.21	-1.3
2,164	-		GFF6870	0.21	-0.6
2,164	-		GFF6870	0.21	-0.2
2,164	-		GFF6870	0.21	-0.5
2,234	+		GFF6870	0.28	-0.8
2,234	+		GFF6870	0.28	-1.0
2,234	+		GFF6870	0.28	-0.1
2,235	-		GFF6870	0.28	-1.6
2,235	-		GFF6870	0.28	+1.9
2,235	-		GFF6870	0.28	+0.1
2,235	-		GFF6870	0.28	-0.1
2,355	+		GFF6870	0.41	-0.2
2,355	+		GFF6870	0.41	-0.5
2,355	+		GFF6870	0.41	+0.9
2,355	+		GFF6870	0.41	+0.3
2,356	-		GFF6870	0.41	-1.5
2,356	-		GFF6870	0.41	-0.3
2,356	-		GFF6870	0.41	-0.4
2,356	-		GFF6870	0.41	-0.9
2,356	-		GFF6870	0.41	+2.1
2,356	-		GFF6870	0.41	-0.5
2,385	+		GFF6870	0.44	+0.6
2,386	-		GFF6870	0.44	-0.8
2,386	-		GFF6870	0.44	-0.3
2,386	-		GFF6870	0.44	-1.1
2,386	-		GFF6870	0.44	-0.2
2,386	-		GFF6870	0.44	-0.9
2,386	-		GFF6870	0.44	-0.6
2,412	+		GFF6870	0.47	+0.6
2,412	+		GFF6870	0.47	-0.5
2,412	+		GFF6870	0.47	+0.1
2,412	+		GFF6870	0.47	+1.7
2,412	+		GFF6870	0.47	-0.6
2,412	+		GFF6870	0.47	+0.2
2,413	-		GFF6870	0.47	-0.8
2,413	-		GFF6870	0.47	-0.2
2,413	-		GFF6870	0.47	+0.2
2,413	-		GFF6870	0.47	+0.8
2,413	-		GFF6870	0.47	-1.1
2,413	-		GFF6870	0.47	+0.1
2,413	-		GFF6870	0.47	+0.7
2,413	-		GFF6870	0.47	-0.8
2,413	-		GFF6870	0.47	-2.8
2,612	-		GFF6870	0.68	+0.1
2,612	-		GFF6870	0.68	+0.2
2,645	+		GFF6870	0.71	+2.0
2,645	+		GFF6870	0.71	+0.1
2,645	+		GFF6870	0.71	-1.0
2,645	+		GFF6870	0.71	-0.5
2,646	-		GFF6870	0.71	-2.5
2,799	+		GFF6870	0.87	-0.1
2,799	+		GFF6870	0.87	-0.1
2,799	+		GFF6870	0.87	+0.8
2,799	+		GFF6870	0.87	-0.1
2,799	+		GFF6870	0.87	-0.9
2,799	+		GFF6870	0.87	-0.7
2,799	+		GFF6870	0.87	-0.3
2,799	+		GFF6870	0.87	-1.1
2,799	+		GFF6870	0.87	-0.3
2,800	-		GFF6870	0.87	-0.3
2,800	-		GFF6870	0.87	+1.0
2,800	-		GFF6870	0.87	-0.5
2,800	-		GFF6870	0.87	-0.5
2,928	+				+0.1
2,928	+				-0.4
2,928	+				-0.0
2,928	+				-0.2
2,928	+				-0.8
2,929	-				+1.0
2,929	-				-0.5