Strain Fitness in Variovorax sp. SCN45 around GFF6846

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6844 and GFF6845 overlap by 4 nucleotidesGFF6845 and GFF6846 are separated by 10 nucleotidesGFF6846 and GFF6847 overlap by 4 nucleotidesGFF6847 and GFF6848 are separated by 10 nucleotides GFF6844 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 26,359 to 27,273 GFF6844 GFF6845 - ATPase involved in DNA repair, at 27,270 to 27,992 GFF6845 GFF6846 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 28,003 to 29,865 GFF6846 GFF6847 - Ferric siderophore transport system, periplasmic binding protein TonB, at 29,862 to 30,599 GFF6847 GFF6848 - Biopolymer transport protein ExbD/TolR, at 30,610 to 31,023 GFF6848 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.346 kb on + strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.362 kb on - strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.452 kb on - strand, within GFF6845at 27.481 kb on + strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.598 kb on + strand, within GFF6845at 27.598 kb on + strand, within GFF6845at 27.599 kb on - strand, within GFF6845at 27.610 kb on + strand, within GFF6845at 28.004 kb on + strandat 28.005 kb on - strandat 28.005 kb on - strandat 28.058 kb on + strandat 28.058 kb on + strandat 28.115 kb on + strandat 28.115 kb on + strandat 28.178 kb on + strandat 28.179 kb on - strandat 28.179 kb on - strandat 28.179 kb on - strandat 28.215 kb on - strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.266 kb on - strand, within GFF6846at 28.266 kb on - strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.283 kb on + strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.284 kb on - strand, within GFF6846at 28.394 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.505 kb on + strand, within GFF6846at 28.506 kb on - strand, within GFF6846at 28.634 kb on + strand, within GFF6846at 28.634 kb on + strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.635 kb on - strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.682 kb on + strand, within GFF6846at 28.683 kb on - strand, within GFF6846at 28.683 kb on - strand, within GFF6846at 28.683 kb on - strand, within GFF6846at 28.683 kb on - strand, within GFF6846at 28.685 kb on + strand, within GFF6846at 28.685 kb on + strand, within GFF6846at 28.686 kb on - strand, within GFF6846at 28.815 kb on - strand, within GFF6846at 28.815 kb on - strand, within GFF6846at 28.922 kb on + strand, within GFF6846at 28.922 kb on + strand, within GFF6846at 28.923 kb on - strand, within GFF6846at 28.923 kb on - strand, within GFF6846at 29.132 kb on + strand, within GFF6846at 29.291 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.453 kb on + strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 29.454 kb on - strand, within GFF6846at 30.118 kb on + strand, within GFF6847at 30.118 kb on + strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.119 kb on - strand, within GFF6847at 30.128 kb on - strand, within GFF6847at 30.465 kb on + strand, within GFF6847at 30.465 kb on + strand, within GFF6847at 30.466 kb on - strand, within GFF6847at 30.466 kb on - strand, within GFF6847at 30.692 kb on + strand, within GFF6848at 30.693 kb on - strand, within GFF6848

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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27,346 + GFF6845 0.11 +1.3
27,347 - GFF6845 0.11 -0.4
27,347 - GFF6845 0.11 +0.2
27,347 - GFF6845 0.11 -0.8
27,347 - GFF6845 0.11 +0.0
27,362 - GFF6845 0.13 -0.1
27,451 + GFF6845 0.25 -1.5
27,451 + GFF6845 0.25 +0.9
27,451 + GFF6845 0.25 -0.2
27,451 + GFF6845 0.25 -1.1
27,451 + GFF6845 0.25 -0.7
27,451 + GFF6845 0.25 -0.0
27,452 - GFF6845 0.25 +0.2
27,481 + GFF6845 0.29 -0.1
27,482 - GFF6845 0.29 -0.5
27,482 - GFF6845 0.29 +0.1
27,482 - GFF6845 0.29 +2.3
27,598 + GFF6845 0.45 -0.7
27,598 + GFF6845 0.45 +0.5
27,599 - GFF6845 0.46 +0.2
27,610 + GFF6845 0.47 -2.8
28,004 + +0.5
28,005 - -0.8
28,005 - +0.7
28,058 + -0.6
28,058 + +0.7
28,115 + -0.4
28,115 + -1.9
28,178 + +0.1
28,179 - -0.5
28,179 - +0.3
28,179 - -0.0
28,215 - GFF6846 0.11 +0.6
28,265 + GFF6846 0.14 -1.3
28,265 + GFF6846 0.14 +0.3
28,265 + GFF6846 0.14 -0.2
28,265 + GFF6846 0.14 -0.5
28,266 - GFF6846 0.14 +0.5
28,266 - GFF6846 0.14 +0.8
28,283 + GFF6846 0.15 +2.0
28,283 + GFF6846 0.15 +0.5
28,283 + GFF6846 0.15 -0.5
28,283 + GFF6846 0.15 +0.2
28,283 + GFF6846 0.15 +1.1
28,283 + GFF6846 0.15 -0.6
28,283 + GFF6846 0.15 -0.8
28,284 - GFF6846 0.15 -1.0
28,284 - GFF6846 0.15 -0.7
28,284 - GFF6846 0.15 +0.3
28,284 - GFF6846 0.15 -1.7
28,284 - GFF6846 0.15 -0.4
28,284 - GFF6846 0.15 +0.0
28,284 - GFF6846 0.15 +0.6
28,394 + GFF6846 0.21 +0.3
28,505 + GFF6846 0.27 -0.2
28,505 + GFF6846 0.27 -0.9
28,505 + GFF6846 0.27 -0.7
28,505 + GFF6846 0.27 +1.1
28,505 + GFF6846 0.27 +0.0
28,505 + GFF6846 0.27 -0.5
28,506 - GFF6846 0.27 +0.1
28,634 + GFF6846 0.34 -0.3
28,634 + GFF6846 0.34 -0.9
28,635 - GFF6846 0.34 -3.0
28,635 - GFF6846 0.34 +0.1
28,635 - GFF6846 0.34 +1.0
28,635 - GFF6846 0.34 -1.0
28,635 - GFF6846 0.34 -3.5
28,635 - GFF6846 0.34 +0.2
28,682 + GFF6846 0.36 -0.3
28,682 + GFF6846 0.36 -0.7
28,682 + GFF6846 0.36 -2.7
28,682 + GFF6846 0.36 -0.4
28,682 + GFF6846 0.36 -2.8
28,682 + GFF6846 0.36 -0.2
28,682 + GFF6846 0.36 -1.4
28,682 + GFF6846 0.36 -1.2
28,683 - GFF6846 0.37 -0.6
28,683 - GFF6846 0.37 -1.5
28,683 - GFF6846 0.37 -0.6
28,683 - GFF6846 0.37 -1.5
28,685 + GFF6846 0.37 -1.2
28,685 + GFF6846 0.37 -1.3
28,686 - GFF6846 0.37 -0.5
28,815 - GFF6846 0.44 -1.0
28,815 - GFF6846 0.44 -1.3
28,922 + GFF6846 0.49 +0.7
28,922 + GFF6846 0.49 -0.8
28,923 - GFF6846 0.49 -0.1
28,923 - GFF6846 0.49 -0.5
29,132 + GFF6846 0.61 +0.5
29,291 + GFF6846 0.69 -0.5
29,453 + GFF6846 0.78 -0.7
29,453 + GFF6846 0.78 -0.2
29,453 + GFF6846 0.78 -0.4
29,453 + GFF6846 0.78 +0.2
29,453 + GFF6846 0.78 +0.3
29,453 + GFF6846 0.78 -2.7
29,453 + GFF6846 0.78 -0.7
29,454 - GFF6846 0.78 -0.3
29,454 - GFF6846 0.78 -0.2
29,454 - GFF6846 0.78 -0.2
29,454 - GFF6846 0.78 -0.0
29,454 - GFF6846 0.78 +0.4
29,454 - GFF6846 0.78 +0.1
29,454 - GFF6846 0.78 -1.2
30,118 + GFF6847 0.35 -1.5
30,118 + GFF6847 0.35 -0.0
30,119 - GFF6847 0.35 -0.3
30,119 - GFF6847 0.35 +0.7
30,119 - GFF6847 0.35 +1.0
30,119 - GFF6847 0.35 +1.0
30,119 - GFF6847 0.35 -0.5
30,119 - GFF6847 0.35 +0.1
30,128 - GFF6847 0.36 +0.4
30,465 + GFF6847 0.82 +0.7
30,465 + GFF6847 0.82 +1.0
30,466 - GFF6847 0.82 +0.3
30,466 - GFF6847 0.82 -0.2
30,692 + GFF6848 0.20 -0.5
30,693 - GFF6848 0.20 -0.1

Or see this region's nucleotide sequence