Strain Fitness in Variovorax sp. SCN45 around GFF6165

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6164 and GFF6165 overlap by 4 nucleotidesGFF6165 and GFF6166 are separated by 49 nucleotidesGFF6166 and GFF6167 are separated by 109 nucleotides GFF6164 - FIG01094124: hypothetical protein, at 69,691 to 70,740 GFF6164 GFF6165 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 70,737 to 71,603 GFF6165 GFF6166 - Transcriptional regulator, AcrR family, at 71,653 to 72,312 GFF6166 GFF6167 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 72,422 to 73,426 GFF6167 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.890 kb on + strand, within GFF6164at 69.890 kb on + strand, within GFF6164at 69.890 kb on + strand, within GFF6164at 69.891 kb on - strand, within GFF6164at 69.891 kb on - strand, within GFF6164at 70.115 kb on + strand, within GFF6164at 70.115 kb on + strand, within GFF6164at 70.116 kb on - strand, within GFF6164at 70.116 kb on - strand, within GFF6164at 70.116 kb on - strand, within GFF6164at 70.116 kb on - strand, within GFF6164at 70.116 kb on - strand, within GFF6164at 70.163 kb on + strand, within GFF6164at 70.163 kb on + strand, within GFF6164at 70.164 kb on - strand, within GFF6164at 70.203 kb on - strand, within GFF6164at 70.203 kb on - strand, within GFF6164at 70.268 kb on + strand, within GFF6164at 70.668 kb on - strandat 70.668 kb on - strandat 70.796 kb on - strandat 70.796 kb on - strandat 70.972 kb on + strand, within GFF6165at 70.972 kb on + strand, within GFF6165at 71.146 kb on + strand, within GFF6165at 71.147 kb on - strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.344 kb on + strand, within GFF6165at 71.345 kb on - strand, within GFF6165at 71.345 kb on - strand, within GFF6165at 71.567 kb on - strandat 71.582 kb on - strandat 71.603 kb on + strandat 71.603 kb on + strandat 71.603 kb on + strandat 71.604 kb on - strandat 71.604 kb on - strandat 71.604 kb on - strandat 71.778 kb on - strand, within GFF6166at 71.778 kb on - strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.801 kb on + strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.802 kb on - strand, within GFF6166at 71.987 kb on + strand, within GFF6166at 71.988 kb on - strand, within GFF6166at 72.080 kb on + strand, within GFF6166at 72.081 kb on - strand, within GFF6166at 72.104 kb on + strand, within GFF6166at 72.104 kb on + strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.105 kb on - strand, within GFF6166at 72.128 kb on + strand, within GFF6166at 72.128 kb on + strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.129 kb on - strand, within GFF6166at 72.134 kb on + strand, within GFF6166at 72.135 kb on - strand, within GFF6166at 72.135 kb on - strand, within GFF6166at 72.375 kb on - strandat 72.558 kb on - strand, within GFF6167at 72.558 kb on - strand, within GFF6167at 72.558 kb on - strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.560 kb on + strand, within GFF6167at 72.561 kb on - strand, within GFF6167at 72.561 kb on - strand, within GFF6167at 72.582 kb on - strand, within GFF6167

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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69,890 + GFF6164 0.19 +0.6
69,890 + GFF6164 0.19 -0.3
69,890 + GFF6164 0.19 +0.1
69,891 - GFF6164 0.19 -1.7
69,891 - GFF6164 0.19 +0.2
70,115 + GFF6164 0.40 -1.9
70,115 + GFF6164 0.40 +0.1
70,116 - GFF6164 0.40 -1.2
70,116 - GFF6164 0.40 -0.5
70,116 - GFF6164 0.40 +0.3
70,116 - GFF6164 0.40 +0.0
70,116 - GFF6164 0.40 -0.5
70,163 + GFF6164 0.45 +0.3
70,163 + GFF6164 0.45 +0.3
70,164 - GFF6164 0.45 -0.1
70,203 - GFF6164 0.49 +0.3
70,203 - GFF6164 0.49 -0.0
70,268 + GFF6164 0.55 -0.5
70,668 - +0.3
70,668 - -1.1
70,796 - -0.5
70,796 - -0.5
70,972 + GFF6165 0.27 +0.2
70,972 + GFF6165 0.27 -1.1
71,146 + GFF6165 0.47 -0.2
71,147 - GFF6165 0.47 +0.2
71,344 + GFF6165 0.70 -0.4
71,344 + GFF6165 0.70 +1.1
71,344 + GFF6165 0.70 +1.1
71,344 + GFF6165 0.70 -0.1
71,344 + GFF6165 0.70 +1.5
71,344 + GFF6165 0.70 +1.4
71,344 + GFF6165 0.70 +0.3
71,345 - GFF6165 0.70 +0.9
71,345 - GFF6165 0.70 +2.1
71,567 - -0.8
71,582 - +1.2
71,603 + -3.2
71,603 + +0.0
71,603 + -0.5
71,604 - -0.6
71,604 - -0.4
71,604 - -0.1
71,778 - GFF6166 0.19 +0.3
71,778 - GFF6166 0.19 +0.5
71,801 + GFF6166 0.22 +0.5
71,801 + GFF6166 0.22 -1.7
71,801 + GFF6166 0.22 -0.8
71,802 - GFF6166 0.23 -1.0
71,802 - GFF6166 0.23 -0.1
71,802 - GFF6166 0.23 -1.3
71,802 - GFF6166 0.23 -2.0
71,802 - GFF6166 0.23 +0.5
71,802 - GFF6166 0.23 +0.3
71,802 - GFF6166 0.23 -0.3
71,802 - GFF6166 0.23 -0.1
71,987 + GFF6166 0.51 +0.6
71,988 - GFF6166 0.51 +0.3
72,080 + GFF6166 0.65 -1.2
72,081 - GFF6166 0.65 -0.8
72,104 + GFF6166 0.68 +0.1
72,104 + GFF6166 0.68 +1.5
72,105 - GFF6166 0.68 -0.2
72,105 - GFF6166 0.68 -1.3
72,105 - GFF6166 0.68 +2.7
72,105 - GFF6166 0.68 -0.3
72,128 + GFF6166 0.72 -0.9
72,128 + GFF6166 0.72 +0.5
72,129 - GFF6166 0.72 -1.3
72,129 - GFF6166 0.72 +0.5
72,129 - GFF6166 0.72 -1.0
72,129 - GFF6166 0.72 +1.1
72,134 + GFF6166 0.73 -0.9
72,135 - GFF6166 0.73 -0.7
72,135 - GFF6166 0.73 +0.6
72,375 - -0.3
72,558 - GFF6167 0.14 -1.5
72,558 - GFF6167 0.14 -0.5
72,558 - GFF6167 0.14 +0.5
72,560 + GFF6167 0.14 -0.9
72,560 + GFF6167 0.14 +0.3
72,560 + GFF6167 0.14 +1.2
72,561 - GFF6167 0.14 +1.5
72,561 - GFF6167 0.14 -1.1
72,582 - GFF6167 0.16 -0.1

Or see this region's nucleotide sequence