Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5920 and GFF5921 are separated by 31 nucleotides GFF5921 and GFF5922 are separated by 52 nucleotides GFF5922 and GFF5923 are separated by 83 nucleotides GFF5923 and GFF5924 overlap by 8 nucleotides
GFF5920 - no description, at 135,177 to 136,046
GFF5920
GFF5921 - T6SS protein serine/threonine phosphatase PppA, at 136,078 to 136,881
GFF5921
GFF5922 - T6SS forkhead associated domain protein ImpI/VasC, at 136,934 to 138,613
GFF5922
GFF5923 - hypothetical protein, at 138,697 to 138,867
GFF5923
GFF5924 - FOG: HEAT repeat, at 138,860 to 140,152
GFF5924
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -1
0
1 at 136.176 kb on - strand, within GFF5921 at 136.176 kb on - strand, within GFF5921 at 136.835 kb on + strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.836 kb on - strand at 136.836 kb on - strand at 136.971 kb on + strand at 137.040 kb on + strand at 138.435 kb on + strand, within GFF5922 at 138.435 kb on + strand, within GFF5922 at 138.435 kb on + strand, within GFF5922 at 138.477 kb on - strand at 138.602 kb on + strand at 138.604 kb on + strand at 138.604 kb on + strand at 138.605 kb on - strand at 138.605 kb on - strand at 138.605 kb on - strand at 138.605 kb on - strand at 138.664 kb on - strand at 138.698 kb on + strand at 138.698 kb on + strand at 138.705 kb on + strand at 138.705 kb on + strand at 138.706 kb on - strand at 138.706 kb on - strand at 138.706 kb on - strand at 138.706 kb on - strand at 139.041 kb on + strand, within GFF5924 at 139.042 kb on - strand, within GFF5924 at 139.042 kb on - strand, within GFF5924 at 139.042 kb on - strand, within GFF5924
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 136,176 - GFF5921 0.12 -1.0 136,176 - GFF5921 0.12 +0.4 136,835 + -0.9 136,835 + -0.3 136,835 + -0.7 136,836 - +0.0 136,836 - -0.2 136,971 + +0.3 137,040 + +0.1 138,435 + GFF5922 0.89 -0.5 138,435 + GFF5922 0.89 -1.3 138,435 + GFF5922 0.89 -1.5 138,477 - +0.3 138,602 + -0.6 138,604 + -0.9 138,604 + -0.5 138,605 - -1.3 138,605 - +1.1 138,605 - +0.1 138,605 - -1.2 138,664 - -0.1 138,698 + -1.0 138,698 + -0.9 138,705 + -0.2 138,705 + +0.1 138,706 - +0.5 138,706 - -1.1 138,706 - -0.5 138,706 - -0.3 139,041 + GFF5924 0.14 -0.2 139,042 - GFF5924 0.14 +1.1 139,042 - GFF5924 0.14 -1.6 139,042 - GFF5924 0.14 +0.1
Or see this region's nucleotide sequence