Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5456 and GFF5457 are separated by 178 nucleotides GFF5457 and GFF5458 are separated by 28 nucleotides
GFF5456 - L-threonate/D-erythronate transcriptional regulator, GntR family, at 86,941 to 87,717
GFF5456
GFF5457 - L-threonate dehydrogenase (NAD+), at 87,896 to 88,768
GFF5457
GFF5458 - D-erythronate dehydrogenase (NAD+), at 88,797 to 89,813
GFF5458
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 86.910 kb on + strand at 86.911 kb on - strand at 86.911 kb on - strand at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.300 kb on + strand, within GFF5456 at 87.301 kb on - strand, within GFF5456 at 87.301 kb on - strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.777 kb on - strand at 87.777 kb on - strand at 87.777 kb on - strand at 87.787 kb on + strand at 87.788 kb on - strand at 87.788 kb on - strand at 88.217 kb on + strand, within GFF5457 at 88.217 kb on + strand, within GFF5457 at 88.346 kb on + strand, within GFF5457 at 88.347 kb on - strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.556 kb on + strand, within GFF5457 at 88.556 kb on + strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.691 kb on + strand at 88.692 kb on - strand at 89.263 kb on - strand, within GFF5458 at 89.263 kb on - strand, within GFF5458 at 89.263 kb on - strand, within GFF5458 at 89.764 kb on - strand at 89.764 kb on - strand at 89.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 86,910 + +0.9 86,911 - +0.0 86,911 - +0.0 87,166 + GFF5456 0.29 -0.3 87,166 + GFF5456 0.29 -0.3 87,166 + GFF5456 0.29 -0.4 87,166 + GFF5456 0.29 +0.2 87,166 + GFF5456 0.29 -1.2 87,166 + GFF5456 0.29 -0.2 87,167 - GFF5456 0.29 +1.7 87,167 - GFF5456 0.29 -0.4 87,167 - GFF5456 0.29 +0.4 87,167 - GFF5456 0.29 -0.6 87,167 - GFF5456 0.29 -0.0 87,167 - GFF5456 0.29 -1.6 87,167 - GFF5456 0.29 -0.6 87,167 - GFF5456 0.29 -1.0 87,167 - GFF5456 0.29 -1.9 87,300 + GFF5456 0.46 -1.6 87,301 - GFF5456 0.46 -0.9 87,301 - GFF5456 0.46 -0.6 87,451 + GFF5456 0.66 +0.2 87,451 + GFF5456 0.66 +0.0 87,451 + GFF5456 0.66 +0.1 87,451 + GFF5456 0.66 -0.8 87,451 + GFF5456 0.66 -0.4 87,451 + GFF5456 0.66 -1.5 87,452 - GFF5456 0.66 -0.5 87,452 - GFF5456 0.66 +0.2 87,452 - GFF5456 0.66 -1.2 87,452 - GFF5456 0.66 +0.2 87,452 - GFF5456 0.66 -1.6 87,452 - GFF5456 0.66 -0.1 87,777 - -0.2 87,777 - -1.9 87,777 - +0.2 87,787 + -0.8 87,788 - +0.6 87,788 - -0.4 88,217 + GFF5457 0.37 +0.8 88,217 + GFF5457 0.37 +0.1 88,346 + GFF5457 0.52 -0.4 88,347 - GFF5457 0.52 -0.5 88,481 + GFF5457 0.67 -0.7 88,481 + GFF5457 0.67 +1.3 88,481 + GFF5457 0.67 -0.1 88,482 - GFF5457 0.67 -2.0 88,482 - GFF5457 0.67 -0.4 88,482 - GFF5457 0.67 +0.3 88,482 - GFF5457 0.67 -0.3 88,482 - GFF5457 0.67 -0.6 88,482 - GFF5457 0.67 -0.5 88,482 - GFF5457 0.67 -0.4 88,482 - GFF5457 0.67 -0.6 88,482 - GFF5457 0.67 -0.1 88,556 + GFF5457 0.76 -0.3 88,556 + GFF5457 0.76 -0.4 88,557 - GFF5457 0.76 +0.2 88,557 - GFF5457 0.76 -0.4 88,557 - GFF5457 0.76 -1.4 88,557 - GFF5457 0.76 -2.1 88,691 + -2.0 88,692 - +0.2 89,263 - GFF5458 0.46 -0.7 89,263 - GFF5458 0.46 -0.2 89,263 - GFF5458 0.46 +0.6 89,764 - +0.2 89,764 - -0.3 89,764 - +0.1
Or see this region's nucleotide sequence