Strain Fitness in Variovorax sp. SCN45 around GFF5453

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
80,643	+		GFF5451	0.33	-1.3
80,643	+		GFF5451	0.33	-1.7
80,643	+		GFF5451	0.33	+0.0
80,643	+		GFF5451	0.33	+0.0
80,643	+		GFF5451	0.33	-0.9
80,643	+		GFF5451	0.33	-0.0
80,644	-		GFF5451	0.33	-0.5
80,644	-		GFF5451	0.33	-2.1
80,644	-		GFF5451	0.33	-0.5
80,644	-		GFF5451	0.33	-0.1
80,644	-		GFF5451	0.33	-0.9
80,644	-		GFF5451	0.33	+0.1
80,644	-		GFF5451	0.33	+0.7
80,646	+		GFF5451	0.33	-2.6
80,646	+		GFF5451	0.33	+0.0
80,646	+		GFF5451	0.33	+0.3
80,646	+		GFF5451	0.33	+0.3
80,646	+		GFF5451	0.33	-0.4
80,646	+		GFF5451	0.33	-1.4
80,646	+		GFF5451	0.33	+0.5
80,647	-		GFF5451	0.33	+1.8
80,647	-		GFF5451	0.33	-0.0
80,647	-		GFF5451	0.33	+0.1
80,647	-		GFF5451	0.33	-0.9
80,647	-		GFF5451	0.33	+0.8
80,647	-		GFF5451	0.33	-0.0
80,647	-		GFF5451	0.33	-0.3
80,647	-		GFF5451	0.33	-1.3
80,658	+		GFF5451	0.34	-0.3
80,658	+		GFF5451	0.34	-0.5
80,658	+		GFF5451	0.34	-0.2
80,658	+		GFF5451	0.34	-0.3
80,658	+		GFF5451	0.34	+0.8
80,658	+		GFF5451	0.34	+0.1
80,658	+		GFF5451	0.34	+0.6
80,658	+		GFF5451	0.34	+1.1
80,659	-		GFF5451	0.34	-0.9
80,659	-		GFF5451	0.34	+1.8
80,659	-		GFF5451	0.34	-0.5
80,659	-		GFF5451	0.34	-0.2
80,659	-		GFF5451	0.34	-0.8
80,659	-		GFF5451	0.34	-1.2
80,659	-		GFF5451	0.34	+0.1
80,703	+		GFF5451	0.38	-1.0
80,703	+		GFF5451	0.38	+0.1
80,703	+		GFF5451	0.38	-0.6
80,704	-		GFF5451	0.38	-0.4
80,704	-		GFF5451	0.38	-0.2
80,704	-		GFF5451	0.38	-0.9
80,704	-		GFF5451	0.38	-0.3
80,704	-		GFF5451	0.38	-0.8
80,704	-		GFF5451	0.38	-0.8
80,742	+		GFF5451	0.42	-0.6
80,742	+		GFF5451	0.42	-0.6
80,742	+		GFF5451	0.42	-1.2
80,743	-		GFF5451	0.42	-0.6
80,887	-		GFF5451	0.55	-0.7
80,934	+		GFF5451	0.59	+0.3
80,935	-		GFF5451	0.59	-1.9
81,063	+		GFF5451	0.71	+2.1
81,063	+		GFF5451	0.71	-1.5
81,063	+		GFF5451	0.71	-0.2
81,063	+		GFF5451	0.71	-0.7
81,064	-		GFF5451	0.71	-0.9
81,064	-		GFF5451	0.71	-0.6
81,064	-		GFF5451	0.71	-0.7
81,064	-		GFF5451	0.71	-0.2
81,064	-		GFF5451	0.71	-1.1
81,064	-		GFF5451	0.71	+1.8
81,064	-		GFF5451	0.71	-1.1
81,064	-		GFF5451	0.71	-0.7
81,064	-		GFF5451	0.71	-0.0
81,064	-		GFF5451	0.71	-0.5
81,156	-		GFF5451	0.79	+0.5
81,183	+		GFF5451	0.81	+0.4
81,291	+				-0.2
81,291	+				+1.1
81,291	+				-0.8
81,291	+				-2.1
81,292	-				+0.1
81,292	-				+0.1
81,292	-				-0.3
81,292	-				-1.7
81,292	-				+0.2
81,292	-				+0.0
81,468	+				+0.3
81,468	+				+1.0
81,468	+				-1.0
81,468	+				+1.2
81,469	-				-0.4
81,469	-				-0.2
81,469	-				+0.2
81,469	-				+0.1
81,469	-				-0.2
81,469	-				-0.8
81,469	-				-0.6
81,469	-				+0.4
81,469	-				-0.2
81,469	-				-0.8
81,469	-				+0.0
81,479	+		GFF5452	0.11	-2.1
81,479	+		GFF5452	0.11	-0.5
81,479	+		GFF5452	0.11	+0.2
81,479	+		GFF5452	0.11	-0.8
81,480	-		GFF5452	0.12	-0.7
81,480	-		GFF5452	0.12	-0.6
81,480	-		GFF5452	0.12	-0.8
81,480	-		GFF5452	0.12	+0.2
81,480	-		GFF5452	0.12	+1.0
81,855	+		GFF5453	0.12	-0.6
81,855	+		GFF5453	0.12	-0.5
81,855	+		GFF5453	0.12	-0.3
81,855	+		GFF5453	0.12	-0.0
81,855	+		GFF5453	0.12	+0.0
81,855	+		GFF5453	0.12	+0.5
81,855	+		GFF5453	0.12	+0.1
81,855	+		GFF5453	0.12	-0.2
81,855	+		GFF5453	0.12	+0.1
81,856	-		GFF5453	0.12	+0.1
81,856	-		GFF5453	0.12	-1.2
81,856	-		GFF5453	0.12	+1.0
81,867	+		GFF5453	0.12	-0.6
81,867	+		GFF5453	0.12	-0.4
81,867	+		GFF5453	0.12	-0.4
81,868	-		GFF5453	0.13	-0.0
81,868	-		GFF5453	0.13	-1.0
81,868	-		GFF5453	0.13	-1.4
81,868	-		GFF5453	0.13	+1.1
81,936	+		GFF5453	0.16	+0.8
81,936	+		GFF5453	0.16	+2.1
81,936	+		GFF5453	0.16	+0.0
81,937	-		GFF5453	0.16	-0.0
81,937	-		GFF5453	0.16	-1.1
81,939	+		GFF5453	0.16	+0.3
81,939	+		GFF5453	0.16	-0.0
81,939	+		GFF5453	0.16	+0.1
81,939	+		GFF5453	0.16	+0.3
81,939	+		GFF5453	0.16	+0.3
81,939	+		GFF5453	0.16	-0.0
81,939	+		GFF5453	0.16	-0.8
81,940	-		GFF5453	0.16	+0.0
81,940	-		GFF5453	0.16	+0.9
81,940	-		GFF5453	0.16	-0.1
81,940	-		GFF5453	0.16	-0.4
81,940	-		GFF5453	0.16	-1.1
81,940	-		GFF5453	0.16	+0.3
81,940	-		GFF5453	0.16	-1.0
81,940	-		GFF5453	0.16	+0.8
81,940	-		GFF5453	0.16	+0.3
81,940	-		GFF5453	0.16	+3.8
81,940	-		GFF5453	0.16	+0.5
82,098	+		GFF5453	0.24	+1.0
82,098	+		GFF5453	0.24	-1.5
82,098	+		GFF5453	0.24	-0.0
82,099	-		GFF5453	0.24	+0.2
82,099	-		GFF5453	0.24	-0.8
82,099	-		GFF5453	0.24	+0.7
82,099	-		GFF5453	0.24	-0.6
82,131	+		GFF5453	0.26	+0.6
82,131	+		GFF5453	0.26	+0.0
82,131	+		GFF5453	0.26	+0.2
82,131	+		GFF5453	0.26	-0.9
82,132	-		GFF5453	0.26	-0.0
82,132	-		GFF5453	0.26	-0.5
82,132	-		GFF5453	0.26	-1.1
82,132	-		GFF5453	0.26	+0.4
82,132	-		GFF5453	0.26	+0.6
82,132	-		GFF5453	0.26	-0.3
82,209	+		GFF5453	0.30	+0.0
82,209	+		GFF5453	0.30	+1.1
82,209	+		GFF5453	0.30	+0.1
82,209	+		GFF5453	0.30	-0.4
82,210	-		GFF5453	0.30	-0.2
82,210	-		GFF5453	0.30	-0.5
82,210	-		GFF5453	0.30	+1.1
82,210	-		GFF5453	0.30	+1.3
82,210	-		GFF5453	0.30	-0.6
82,210	-		GFF5453	0.30	-0.6
82,210	-		GFF5453	0.30	+0.2
82,210	-		GFF5453	0.30	+0.4
82,210	-		GFF5453	0.30	-0.7
82,210	-		GFF5453	0.30	+0.2
82,210	-		GFF5453	0.30	-0.8
82,302	+		GFF5453	0.34	-0.7
82,303	-		GFF5453	0.34	-0.0
82,303	-		GFF5453	0.34	+0.9
82,350	+		GFF5453	0.37	+1.0
82,350	+		GFF5453	0.37	-0.5
82,350	+		GFF5453	0.37	+1.4
82,350	+		GFF5453	0.37	-0.5
82,350	+		GFF5453	0.37	-1.7
82,351	-		GFF5453	0.37	+0.0
82,351	-		GFF5453	0.37	-0.3
82,351	-		GFF5453	0.37	+0.3
82,351	-		GFF5453	0.37	-1.2
82,351	-		GFF5453	0.37	-0.2
82,351	-		GFF5453	0.37	+1.1
82,351	-		GFF5453	0.37	-0.1
82,351	-		GFF5453	0.37	-0.2
82,352	+		GFF5453	0.37	+0.7
82,352	+		GFF5453	0.37	-0.2
82,352	+		GFF5453	0.37	+0.1
82,352	+		GFF5453	0.37	-1.9
82,353	-		GFF5453	0.37	-1.1
82,353	-		GFF5453	0.37	-1.2
82,353	-		GFF5453	0.37	-0.6
82,353	-		GFF5453	0.37	-1.3
82,353	-		GFF5453	0.37	-1.3
82,353	-		GFF5453	0.37	+0.0
82,398	+		GFF5453	0.39	+1.8
82,398	+		GFF5453	0.39	+0.4
82,398	+		GFF5453	0.39	-1.4
82,398	+		GFF5453	0.39	+0.1
82,399	-		GFF5453	0.39	+0.4
82,458	+		GFF5453	0.42	+0.3
82,458	+		GFF5453	0.42	-0.8
82,458	+		GFF5453	0.42	+0.6
82,458	+		GFF5453	0.42	+0.2
82,458	+		GFF5453	0.42	-0.8
82,458	+		GFF5453	0.42	+0.2
82,458	+		GFF5453	0.42	+0.6
82,458	+		GFF5453	0.42	+0.3
82,459	-		GFF5453	0.42	+1.0
82,459	-		GFF5453	0.42	-0.4
82,459	-		GFF5453	0.42	-0.8
82,459	-		GFF5453	0.42	-0.7
82,459	-		GFF5453	0.42	-1.5
82,459	-		GFF5453	0.42	-0.9
82,459	-		GFF5453	0.42	+1.1
82,533	+		GFF5453	0.46	+0.6
82,533	+		GFF5453	0.46	+0.4
82,534	-		GFF5453	0.46	-2.3
82,534	-		GFF5453	0.46	-0.4
82,534	-		GFF5453	0.46	-0.6
82,534	-		GFF5453	0.46	-1.2
82,534	-		GFF5453	0.46	+0.2
82,534	-		GFF5453	0.46	-0.6
82,534	-		GFF5453	0.46	-0.6
82,534	-		GFF5453	0.46	+1.3
82,599	+		GFF5453	0.49	+0.2
82,599	+		GFF5453	0.49	-0.4
82,599	+		GFF5453	0.49	+1.2
82,599	+		GFF5453	0.49	-0.4
82,599	+		GFF5453	0.49	+0.3
82,599	+		GFF5453	0.49	-0.5
82,599	+		GFF5453	0.49	+0.2
82,599	+		GFF5453	0.49	-0.6
82,600	-		GFF5453	0.49	-0.0
82,600	-		GFF5453	0.49	-0.2
82,600	-		GFF5453	0.49	-0.1
82,600	-		GFF5453	0.49	+0.5
82,600	-		GFF5453	0.49	+0.1
82,600	-		GFF5453	0.49	-0.5
82,600	-		GFF5453	0.49	+0.0
82,600	-		GFF5453	0.49	+0.0
82,600	-		GFF5453	0.49	-0.2
82,600	-		GFF5453	0.49	+0.4
82,600	-		GFF5453	0.49	-0.4
82,600	-		GFF5453	0.49	-0.4
82,611	+		GFF5453	0.50	+2.8
82,612	-		GFF5453	0.50	+0.1
82,612	-		GFF5453	0.50	+0.0
82,612	-		GFF5453	0.50	+1.5
82,612	-		GFF5453	0.50	+0.4
82,624	-		GFF5453	0.50	+0.4
82,624	-		GFF5453	0.50	-0.2
82,746	+		GFF5453	0.57	-0.5
82,746	+		GFF5453	0.57	+0.4
82,746	+		GFF5453	0.57	+0.7
82,746	+		GFF5453	0.57	+1.6
82,746	+		GFF5453	0.57	-0.4
82,746	+		GFF5453	0.57	-0.0
82,746	+		GFF5453	0.57	-0.4
82,746	+		GFF5453	0.57	+0.2
82,746	+		GFF5453	0.57	+0.3
82,746	+		GFF5453	0.57	-0.3
82,746	+		GFF5453	0.57	-0.6
82,746	+		GFF5453	0.57	-0.5
82,747	-		GFF5453	0.57	-1.0
82,747	-		GFF5453	0.57	-1.4
82,747	-		GFF5453	0.57	-0.0
82,747	-		GFF5453	0.57	+1.6
82,747	-		GFF5453	0.57	+0.3
82,775	+		GFF5453	0.58	+0.6
82,775	+		GFF5453	0.58	-1.6
82,775	+		GFF5453	0.58	-0.2
82,775	+		GFF5453	0.58	+0.5
82,776	-		GFF5453	0.58	+1.0
82,776	-		GFF5453	0.58	-0.5
82,812	+		GFF5453	0.60	-0.0
82,812	+		GFF5453	0.60	+0.8
82,812	+		GFF5453	0.60	-0.3
82,813	-		GFF5453	0.60	-0.1
82,813	-		GFF5453	0.60	-0.1
82,813	-		GFF5453	0.60	-0.4
82,813	-		GFF5453	0.60	-0.3
82,813	-		GFF5453	0.60	+0.2
82,813	-		GFF5453	0.60	+0.2
82,813	-		GFF5453	0.60	+0.8
82,813	-		GFF5453	0.60	-0.4
82,813	-		GFF5453	0.60	+0.3
82,813	-		GFF5453	0.60	+0.2
82,813	-		GFF5453	0.60	+0.6
82,813	-		GFF5453	0.60	-1.3
82,813	-		GFF5453	0.60	+0.1
82,813	-		GFF5453	0.60	+0.8
82,813	-		GFF5453	0.60	-0.3
82,824	+		GFF5453	0.60	-0.6
82,824	+		GFF5453	0.60	-0.0
82,824	+		GFF5453	0.60	-0.6
82,824	+		GFF5453	0.60	-0.7
82,824	+		GFF5453	0.60	+1.3
82,824	+		GFF5453	0.60	+0.8
82,824	+		GFF5453	0.60	-1.0
82,824	+		GFF5453	0.60	-0.6
82,824	+		GFF5453	0.60	-0.2
82,824	+		GFF5453	0.60	+0.3
82,824	+		GFF5453	0.60	+0.0
82,824	+		GFF5453	0.60	-0.4
82,824	+		GFF5453	0.60	-0.4
82,824	+		GFF5453	0.60	-0.1
82,825	-		GFF5453	0.61	+0.2
82,825	-		GFF5453	0.61	-0.9
82,825	-		GFF5453	0.61	-0.1
82,825	-		GFF5453	0.61	+0.5
82,825	-		GFF5453	0.61	-0.8
82,825	-		GFF5453	0.61	-0.6
82,825	-		GFF5453	0.61	-0.1
82,825	-		GFF5453	0.61	-0.2
82,825	-		GFF5453	0.61	-0.5
82,825	-		GFF5453	0.61	-1.1
82,825	-		GFF5453	0.61	+0.2
82,825	-		GFF5453	0.61	+0.3
82,902	+		GFF5453	0.64	+0.1
82,903	-		GFF5453	0.64	+1.1
82,980	+		GFF5453	0.68	+0.3
82,980	+		GFF5453	0.68	-0.0
82,980	+		GFF5453	0.68	+0.1
82,981	-		GFF5453	0.68	+0.1
83,315	-		GFF5453	0.85	-0.4
83,325	+		GFF5453	0.86	+0.5
83,325	+		GFF5453	0.86	-0.6
83,325	+		GFF5453	0.86	-0.0
83,325	+		GFF5453	0.86	-1.2
83,326	-		GFF5453	0.86	-1.3
83,326	-		GFF5453	0.86	+0.2
83,326	-		GFF5453	0.86	-2.2
83,326	-		GFF5453	0.86	+0.5
83,326	-		GFF5453	0.86	-0.6
83,326	-		GFF5453	0.86	-0.7
83,424	+				+1.8
83,424	+				+1.8
83,424	+				-0.5
83,424	+				-0.9
83,424	+				-0.3
83,424	+				+0.9
83,424	+				+0.2
83,424	+				+0.0
83,424	+				-0.0
83,424	+				+0.2
83,424	+				+0.2
83,424	+				-1.0
83,424	+				+1.3
83,424	+				-0.8
83,424	+				-0.9
83,425	-				+0.4
83,425	-				-2.5
83,425	-				+0.3
83,425	-				+0.8
83,425	-				-0.6
83,425	-				-0.3
83,425	-				-0.9
83,425	-				+0.2
83,425	-				-0.7
83,425	-				-0.1
83,425	-				-1.7
83,425	-				+0.1
83,425	-				-0.3
83,425	-				+1.0
83,425	-				-1.3
83,508	+				-0.3
83,508	+				-0.5
83,508	+				+0.1
83,509	-				-0.1
83,509	-				-0.5
83,509	-				+0.1
83,509	-				-0.1
83,541	+				-0.3
83,541	+				-0.0
83,541	+				+1.6
83,541	+				-0.3
83,541	+				+0.0
83,541	+				+0.2
83,541	+				+0.4
83,542	-				-0.0
83,542	-				-0.1
83,542	-				-0.4
83,542	-				-0.7
83,542	-				+0.5
83,553	+				-0.2
83,553	+				-0.8
83,553	+				-0.7
83,554	-				+0.7
83,554	-				-0.3
83,571	+				-0.7
83,572	-				-1.4
83,610	+				-1.2
83,610	+				-1.2
83,610	+				-0.5
83,621	+				+2.5
83,665	+				+0.3
83,665	+				-1.9
83,665	+				-0.9
83,665	+				-1.4
83,665	+				-0.5
83,665	+				-1.5
83,665	+				+0.3
83,666	-				-0.1
83,666	-				-0.3
83,666	-				+0.6
83,666	-				+0.6
83,666	-				+2.2
83,666	-				+0.6
83,666	-				+0.5
83,666	-				-0.1
83,666	-				+0.4
83,724	+		GFF5454	0.20	+0.8
83,724	+		GFF5454	0.20	+1.0
83,725	-		GFF5454	0.20	-1.0
83,725	-		GFF5454	0.20	-0.2
83,785	+		GFF5454	0.33	-1.3
83,785	+		GFF5454	0.33	-0.6
83,786	-		GFF5454	0.33	+0.4
83,786	-		GFF5454	0.33	-0.0
83,786	-		GFF5454	0.33	-0.1
83,809	+		GFF5454	0.38	+1.3
83,809	+		GFF5454	0.38	+0.1
83,809	+		GFF5454	0.38	+1.2
83,809	+		GFF5454	0.38	+0.9
83,809	+		GFF5454	0.38	-0.1
83,810	-		GFF5454	0.38	-0.2
83,810	-		GFF5454	0.38	-0.1
83,810	-		GFF5454	0.38	-0.0
83,947	+		GFF5454	0.67	-0.2
83,947	+		GFF5454	0.67	+1.4
83,948	-		GFF5454	0.68	-0.5
83,948	-		GFF5454	0.68	-0.1
84,175	+				-0.7
84,175	+				+1.0
84,175	+				+0.3
84,175	+				-1.0
84,175	+				-0.0
84,176	-				-0.9
84,176	-				+0.5
84,176	-				-0.1
84,176	-				-0.9
84,176	-				-0.1
84,176	-				-0.2
84,195	+				-0.5
84,195	+				+0.1
84,196	-				-0.2
84,254	+				+0.3
84,255	-				-0.7
84,255	-				+0.6
84,423	+				-1.7
84,423	+				+0.9
84,423	+				-0.2
84,423	+				+0.9
84,423	+				-1.2
84,423	+				-0.0
84,423	+				-0.6
84,423	+				-0.0
84,423	+				-0.4
84,424	-				-0.6
84,424	-				-1.6
84,424	-				-0.4
84,424	-				-1.0
84,424	-				-1.2
84,424	-				+0.8
84,546	+		GFF5455	0.13	+0.2
84,546	+		GFF5455	0.13	+0.5
84,547	-		GFF5455	0.13	+0.9
84,547	-		GFF5455	0.13	-0.6
84,547	-		GFF5455	0.13	-0.3
84,576	+		GFF5455	0.14	-0.7
84,576	+		GFF5455	0.14	+0.9
84,576	+		GFF5455	0.14	-1.2
84,576	+		GFF5455	0.14	+0.1
84,577	-		GFF5455	0.14	-0.2
84,577	-		GFF5455	0.14	-1.0
84,577	-		GFF5455	0.14	+0.2
84,577	-		GFF5455	0.14	-0.3
84,577	-		GFF5455	0.14	+0.0
84,577	-		GFF5455	0.14	+0.3