Strain Fitness in Variovorax sp. SCN45 around GFF5260

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5259 and GFF5260 are separated by 73 nucleotidesGFF5260 and GFF5261 are separated by 18 nucleotides GFF5259 - Na+/solute symporter, at 123,854 to 125,359 GFF5259 GFF5260 - Uncharacterized protein ygiD, at 125,433 to 126,341 GFF5260 GFF5261 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 126,360 to 127,832 GFF5261 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.592 kb on + strand, within GFF5259at 124.592 kb on + strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.937 kb on + strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 124.938 kb on - strand, within GFF5259at 125.179 kb on + strand, within GFF5259at 125.179 kb on + strand, within GFF5259at 125.252 kb on + strandat 125.358 kb on - strandat 125.417 kb on - strandat 125.417 kb on - strandat 125.794 kb on - strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.911 kb on - strand, within GFF5260at 125.959 kb on - strand, within GFF5260at 125.982 kb on + strand, within GFF5260at 125.983 kb on - strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.229 kb on - strand, within GFF5260at 126.229 kb on - strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.352 kb on - strandat 126.361 kb on + strandat 126.361 kb on + strandat 126.361 kb on + strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.571 kb on + strand, within GFF5261at 126.571 kb on + strand, within GFF5261at 126.847 kb on + strand, within GFF5261at 126.847 kb on + strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.967 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.986 kb on - strand, within GFF5261at 127.171 kb on + strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.316 kb on - strand, within GFF5261

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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124,451 + GFF5259 0.40 +0.5
124,451 + GFF5259 0.40 +0.9
124,451 + GFF5259 0.40 -0.7
124,451 + GFF5259 0.40 -0.2
124,451 + GFF5259 0.40 +0.4
124,452 - GFF5259 0.40 +0.6
124,452 - GFF5259 0.40 -0.1
124,452 - GFF5259 0.40 -0.0
124,452 - GFF5259 0.40 -0.1
124,452 - GFF5259 0.40 -0.1
124,452 - GFF5259 0.40 +0.1
124,452 - GFF5259 0.40 -0.3
124,452 - GFF5259 0.40 +0.2
124,452 - GFF5259 0.40 +0.5
124,452 - GFF5259 0.40 -0.0
124,452 - GFF5259 0.40 -0.5
124,452 - GFF5259 0.40 +0.0
124,452 - GFF5259 0.40 +0.1
124,583 + GFF5259 0.48 -0.2
124,583 + GFF5259 0.48 +1.2
124,583 + GFF5259 0.48 +0.1
124,584 - GFF5259 0.48 -0.5
124,584 - GFF5259 0.48 -0.4
124,584 - GFF5259 0.48 +0.1
124,584 - GFF5259 0.48 -0.4
124,592 + GFF5259 0.49 +0.2
124,592 + GFF5259 0.49 -0.5
124,593 - GFF5259 0.49 -0.6
124,593 - GFF5259 0.49 -1.3
124,593 - GFF5259 0.49 -0.6
124,593 - GFF5259 0.49 -0.4
124,634 + GFF5259 0.52 -1.8
124,634 + GFF5259 0.52 -0.1
124,634 + GFF5259 0.52 -0.5
124,635 - GFF5259 0.52 -1.4
124,635 - GFF5259 0.52 +0.0
124,635 - GFF5259 0.52 +0.6
124,712 + GFF5259 0.57 -0.5
124,712 + GFF5259 0.57 -0.8
124,712 + GFF5259 0.57 -0.7
124,713 - GFF5259 0.57 +0.6
124,713 - GFF5259 0.57 +0.3
124,713 - GFF5259 0.57 -0.1
124,713 - GFF5259 0.57 +0.5
124,713 - GFF5259 0.57 -1.8
124,748 + GFF5259 0.59 -0.2
124,748 + GFF5259 0.59 +0.5
124,748 + GFF5259 0.59 +0.0
124,748 + GFF5259 0.59 -2.5
124,748 + GFF5259 0.59 -0.5
124,748 + GFF5259 0.59 +0.4
124,748 + GFF5259 0.59 +0.6
124,748 + GFF5259 0.59 +1.5
124,937 + GFF5259 0.72 -1.3
124,937 + GFF5259 0.72 +1.6
124,937 + GFF5259 0.72 +0.4
124,937 + GFF5259 0.72 -1.3
124,937 + GFF5259 0.72 -0.0
124,937 + GFF5259 0.72 -0.5
124,937 + GFF5259 0.72 -1.0
124,937 + GFF5259 0.72 -0.4
124,938 - GFF5259 0.72 +0.3
124,938 - GFF5259 0.72 -0.8
124,938 - GFF5259 0.72 -0.6
124,938 - GFF5259 0.72 -0.4
124,938 - GFF5259 0.72 +0.0
124,938 - GFF5259 0.72 -0.5
124,938 - GFF5259 0.72 +0.5
124,938 - GFF5259 0.72 +0.3
124,938 - GFF5259 0.72 +0.1
124,938 - GFF5259 0.72 -0.5
124,938 - GFF5259 0.72 -0.5
124,938 - GFF5259 0.72 +1.1
124,938 - GFF5259 0.72 -1.0
124,938 - GFF5259 0.72 -0.7
124,938 - GFF5259 0.72 +0.3
125,179 + GFF5259 0.88 -0.4
125,179 + GFF5259 0.88 +0.4
125,252 + +0.5
125,358 - -0.8
125,417 - +1.6
125,417 - -0.1
125,794 - GFF5260 0.40 -0.1
125,910 + GFF5260 0.52 -0.0
125,910 + GFF5260 0.52 -0.3
125,910 + GFF5260 0.52 +1.1
125,910 + GFF5260 0.52 -0.4
125,910 + GFF5260 0.52 -0.1
125,910 + GFF5260 0.52 -0.4
125,910 + GFF5260 0.52 +0.3
125,910 + GFF5260 0.52 +0.0
125,911 - GFF5260 0.53 -0.4
125,959 - GFF5260 0.58 +0.2
125,982 + GFF5260 0.60 +0.1
125,983 - GFF5260 0.61 -1.5
126,228 + GFF5260 0.87 +0.4
126,228 + GFF5260 0.87 -0.1
126,228 + GFF5260 0.87 +0.4
126,228 + GFF5260 0.87 -0.2
126,228 + GFF5260 0.87 +0.4
126,229 - GFF5260 0.88 +0.6
126,229 - GFF5260 0.88 -0.3
126,231 + GFF5260 0.88 -0.2
126,231 + GFF5260 0.88 +0.9
126,231 + GFF5260 0.88 -0.1
126,231 + GFF5260 0.88 -0.8
126,231 + GFF5260 0.88 +1.0
126,231 + GFF5260 0.88 -0.4
126,232 - GFF5260 0.88 +0.3
126,232 - GFF5260 0.88 +0.4
126,232 - GFF5260 0.88 +1.5
126,288 + +0.1
126,288 + +0.2
126,288 + +0.3
126,288 + -0.0
126,288 + +0.7
126,288 + +0.5
126,289 - -1.0
126,289 - -1.3
126,289 - +0.2
126,289 - +0.6
126,289 - +0.4
126,289 - +0.6
126,352 - +1.0
126,361 + -0.7
126,361 + -2.2
126,361 + -0.4
126,362 - -0.3
126,362 - +0.2
126,362 - -0.6
126,362 - +0.3
126,571 + GFF5261 0.14 -1.7
126,571 + GFF5261 0.14 -3.3
126,847 + GFF5261 0.33 -1.9
126,847 + GFF5261 0.33 -2.8
126,848 - GFF5261 0.33 -2.0
126,848 - GFF5261 0.33 -0.7
126,848 - GFF5261 0.33 -3.7
126,848 - GFF5261 0.33 -1.2
126,967 + GFF5261 0.41 -3.0
126,985 + GFF5261 0.42 -3.0
126,985 + GFF5261 0.42 -2.3
126,985 + GFF5261 0.42 -2.7
126,985 + GFF5261 0.42 -3.5
126,985 + GFF5261 0.42 -3.4
126,986 - GFF5261 0.42 +0.0
127,171 + GFF5261 0.55 +0.0
127,172 - GFF5261 0.55 -0.4
127,172 - GFF5261 0.55 -1.9
127,172 - GFF5261 0.55 -2.2
127,172 - GFF5261 0.55 -2.1
127,315 + GFF5261 0.65 -1.5
127,315 + GFF5261 0.65 -3.0
127,316 - GFF5261 0.65 -2.3

Or see this region's nucleotide sequence