Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5054 and GFF5055 overlap by 4 nucleotides GFF5055 and GFF5056 are separated by 22 nucleotides GFF5056 and GFF5057 are separated by 128 nucleotides
GFF5054 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 154,809 to 156,119
GFF5054
GFF5055 - BUG/TctC family periplasmic protein, at 156,116 to 157,090
GFF5055
GFF5056 - Fumarylacetoacetase (EC 3.7.1.2), at 157,113 to 158,378
GFF5056
GFF5057 - Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4), at 158,507 to 160,480
GFF5057
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 156.198 kb on - strand at 156.198 kb on - strand at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.230 kb on + strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.231 kb on - strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.380 kb on + strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.381 kb on - strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.431 kb on + strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.432 kb on - strand, within GFF5055 at 156.581 kb on + strand, within GFF5055 at 156.581 kb on + strand, within GFF5055 at 156.582 kb on - strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.668 kb on + strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.669 kb on - strand, within GFF5055 at 156.755 kb on - strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.881 kb on + strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 156.882 kb on - strand, within GFF5055 at 157.040 kb on + strand at 157.040 kb on + strand at 157.040 kb on + strand at 157.041 kb on - strand at 157.041 kb on - strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.108 kb on + strand at 157.109 kb on - strand at 157.109 kb on - strand at 157.109 kb on - strand at 157.476 kb on + strand, within GFF5056 at 157.476 kb on + strand, within GFF5056 at 157.476 kb on + strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.477 kb on - strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.488 kb on + strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.489 kb on - strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.557 kb on + strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.558 kb on - strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.695 kb on + strand, within GFF5056 at 157.696 kb on - strand, within GFF5056 at 157.696 kb on - strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.833 kb on + strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 157.834 kb on - strand, within GFF5056 at 158.100 kb on + strand, within GFF5056 at 158.100 kb on + strand, within GFF5056 at 158.101 kb on - strand, within GFF5056 at 158.371 kb on + strand at 158.371 kb on + strand at 158.371 kb on + strand at 158.372 kb on - strand at 158.508 kb on + strand at 158.508 kb on + strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.509 kb on - strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.518 kb on + strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.519 kb on - strand at 158.653 kb on - strand at 158.653 kb on - strand at 158.653 kb on - strand at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.808 kb on + strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.809 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.869 kb on - strand, within GFF5057 at 158.899 kb on + strand, within GFF5057 at 158.958 kb on + strand, within GFF5057 at 158.959 kb on - strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.111 kb on + strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.112 kb on - strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.150 kb on + strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.151 kb on - strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.177 kb on + strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.178 kb on - strand, within GFF5057 at 159.316 kb on - strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.321 kb on + strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057 at 159.322 kb on - strand, within GFF5057
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 156,198 - +0.2 156,198 - -0.4 156,230 + GFF5055 0.12 -0.9 156,230 + GFF5055 0.12 +0.3 156,230 + GFF5055 0.12 -0.2 156,230 + GFF5055 0.12 -0.1 156,230 + GFF5055 0.12 +0.0 156,230 + GFF5055 0.12 -0.6 156,231 - GFF5055 0.12 +0.2 156,231 - GFF5055 0.12 -0.9 156,231 - GFF5055 0.12 -2.1 156,231 - GFF5055 0.12 -0.0 156,380 + GFF5055 0.27 -0.4 156,380 + GFF5055 0.27 +0.6 156,380 + GFF5055 0.27 -2.7 156,381 - GFF5055 0.27 -0.3 156,381 - GFF5055 0.27 +1.1 156,381 - GFF5055 0.27 -0.3 156,381 - GFF5055 0.27 +1.1 156,381 - GFF5055 0.27 -0.4 156,381 - GFF5055 0.27 +0.5 156,431 + GFF5055 0.32 -1.1 156,431 + GFF5055 0.32 -0.7 156,431 + GFF5055 0.32 -1.7 156,431 + GFF5055 0.32 +1.1 156,431 + GFF5055 0.32 -1.0 156,431 + GFF5055 0.32 -0.7 156,431 + GFF5055 0.32 -0.0 156,431 + GFF5055 0.32 +0.1 156,432 - GFF5055 0.32 -0.0 156,432 - GFF5055 0.32 +1.1 156,432 - GFF5055 0.32 -0.3 156,432 - GFF5055 0.32 -0.4 156,432 - GFF5055 0.32 +0.8 156,432 - GFF5055 0.32 -0.4 156,432 - GFF5055 0.32 +0.2 156,432 - GFF5055 0.32 -0.3 156,581 + GFF5055 0.48 -0.3 156,581 + GFF5055 0.48 -0.5 156,582 - GFF5055 0.48 -0.4 156,668 + GFF5055 0.57 +0.1 156,668 + GFF5055 0.57 +0.7 156,668 + GFF5055 0.57 -0.5 156,668 + GFF5055 0.57 +0.3 156,668 + GFF5055 0.57 -0.6 156,668 + GFF5055 0.57 -0.7 156,668 + GFF5055 0.57 +1.7 156,668 + GFF5055 0.57 -0.6 156,669 - GFF5055 0.57 +0.2 156,669 - GFF5055 0.57 -1.0 156,669 - GFF5055 0.57 +1.3 156,669 - GFF5055 0.57 -0.6 156,669 - GFF5055 0.57 +0.8 156,755 - GFF5055 0.66 -0.8 156,881 + GFF5055 0.78 -0.6 156,881 + GFF5055 0.78 -1.0 156,881 + GFF5055 0.78 +0.4 156,882 - GFF5055 0.79 -0.4 156,882 - GFF5055 0.79 -0.3 156,882 - GFF5055 0.79 -0.3 156,882 - GFF5055 0.79 -0.5 157,040 + -0.3 157,040 + -0.1 157,040 + -1.3 157,041 - -0.1 157,041 - +0.2 157,108 + -0.0 157,108 + +0.1 157,108 + -0.5 157,108 + +0.3 157,108 + -0.1 157,108 + -0.7 157,108 + +0.0 157,109 - +0.5 157,109 - -0.4 157,109 - -1.5 157,476 + GFF5056 0.29 +0.4 157,476 + GFF5056 0.29 -0.8 157,476 + GFF5056 0.29 -0.9 157,477 - GFF5056 0.29 +0.1 157,477 - GFF5056 0.29 +0.5 157,477 - GFF5056 0.29 -0.5 157,477 - GFF5056 0.29 +0.1 157,477 - GFF5056 0.29 -0.0 157,477 - GFF5056 0.29 +1.2 157,488 + GFF5056 0.30 +0.7 157,488 + GFF5056 0.30 -0.1 157,488 + GFF5056 0.30 -0.9 157,489 - GFF5056 0.30 +0.1 157,489 - GFF5056 0.30 -0.4 157,489 - GFF5056 0.30 +0.5 157,489 - GFF5056 0.30 -0.9 157,489 - GFF5056 0.30 +0.2 157,489 - GFF5056 0.30 -1.4 157,489 - GFF5056 0.30 +1.4 157,557 + GFF5056 0.35 -0.4 157,557 + GFF5056 0.35 +0.3 157,557 + GFF5056 0.35 -1.7 157,557 + GFF5056 0.35 -0.6 157,557 + GFF5056 0.35 +0.5 157,557 + GFF5056 0.35 +1.0 157,557 + GFF5056 0.35 +0.8 157,558 - GFF5056 0.35 +0.8 157,558 - GFF5056 0.35 +0.8 157,558 - GFF5056 0.35 -0.3 157,558 - GFF5056 0.35 -0.0 157,558 - GFF5056 0.35 +0.0 157,558 - GFF5056 0.35 +0.7 157,558 - GFF5056 0.35 -0.9 157,558 - GFF5056 0.35 +0.5 157,558 - GFF5056 0.35 -0.6 157,558 - GFF5056 0.35 -0.4 157,558 - GFF5056 0.35 +0.3 157,558 - GFF5056 0.35 +0.4 157,558 - GFF5056 0.35 -0.0 157,558 - GFF5056 0.35 +0.1 157,558 - GFF5056 0.35 -1.3 157,558 - GFF5056 0.35 +0.2 157,558 - GFF5056 0.35 -0.5 157,558 - GFF5056 0.35 -0.4 157,695 + GFF5056 0.46 -0.9 157,695 + GFF5056 0.46 -1.0 157,695 + GFF5056 0.46 +0.7 157,695 + GFF5056 0.46 +0.2 157,696 - GFF5056 0.46 +1.1 157,696 - GFF5056 0.46 +1.4 157,833 + GFF5056 0.57 -1.0 157,833 + GFF5056 0.57 -0.1 157,833 + GFF5056 0.57 +0.1 157,834 - GFF5056 0.57 -0.5 157,834 - GFF5056 0.57 -0.8 157,834 - GFF5056 0.57 -0.3 158,100 + GFF5056 0.78 +0.2 158,100 + GFF5056 0.78 -0.2 158,101 - GFF5056 0.78 +0.5 158,371 + -1.3 158,371 + +0.7 158,371 + -0.4 158,372 - -0.8 158,508 + -1.7 158,508 + +0.3 158,509 - -0.1 158,509 - -0.3 158,509 - -0.1 158,509 - +0.2 158,518 + -0.6 158,518 + -0.1 158,518 + -0.6 158,518 + +0.7 158,518 + +0.0 158,518 + +1.1 158,518 + -0.5 158,519 - -1.2 158,519 - -0.4 158,519 - +0.2 158,519 - -0.6 158,519 - +0.1 158,653 - -1.7 158,653 - +0.3 158,653 - -1.4 158,808 + GFF5057 0.15 -1.2 158,808 + GFF5057 0.15 +0.9 158,808 + GFF5057 0.15 -1.7 158,808 + GFF5057 0.15 -1.8 158,808 + GFF5057 0.15 -2.1 158,808 + GFF5057 0.15 -1.0 158,808 + GFF5057 0.15 -1.4 158,808 + GFF5057 0.15 -0.9 158,808 + GFF5057 0.15 -3.1 158,808 + GFF5057 0.15 -2.7 158,808 + GFF5057 0.15 -0.9 158,808 + GFF5057 0.15 -2.4 158,808 + GFF5057 0.15 -1.7 158,809 - GFF5057 0.15 -0.5 158,809 - GFF5057 0.15 -1.6 158,809 - GFF5057 0.15 -0.6 158,809 - GFF5057 0.15 -2.4 158,809 - GFF5057 0.15 -1.0 158,809 - GFF5057 0.15 -0.9 158,809 - GFF5057 0.15 -1.4 158,809 - GFF5057 0.15 -2.1 158,809 - GFF5057 0.15 -1.3 158,809 - GFF5057 0.15 -2.0 158,809 - GFF5057 0.15 -2.9 158,809 - GFF5057 0.15 -1.1 158,809 - GFF5057 0.15 -1.4 158,809 - GFF5057 0.15 -1.3 158,809 - GFF5057 0.15 -0.2 158,809 - GFF5057 0.15 -2.3 158,809 - GFF5057 0.15 -1.6 158,869 - GFF5057 0.18 -0.9 158,869 - GFF5057 0.18 -2.6 158,869 - GFF5057 0.18 -3.1 158,899 + GFF5057 0.20 -2.2 158,958 + GFF5057 0.23 -2.5 158,959 - GFF5057 0.23 -2.0 159,111 + GFF5057 0.31 -0.9 159,111 + GFF5057 0.31 -1.5 159,111 + GFF5057 0.31 -1.5 159,111 + GFF5057 0.31 -1.3 159,111 + GFF5057 0.31 -0.3 159,111 + GFF5057 0.31 -0.3 159,111 + GFF5057 0.31 -2.1 159,112 - GFF5057 0.31 -0.3 159,112 - GFF5057 0.31 -1.7 159,112 - GFF5057 0.31 -1.6 159,112 - GFF5057 0.31 -1.6 159,112 - GFF5057 0.31 -1.3 159,112 - GFF5057 0.31 -2.3 159,112 - GFF5057 0.31 -0.3 159,112 - GFF5057 0.31 -1.5 159,112 - GFF5057 0.31 -1.3 159,150 + GFF5057 0.33 -1.5 159,150 + GFF5057 0.33 -0.4 159,150 + GFF5057 0.33 -1.3 159,150 + GFF5057 0.33 -2.0 159,151 - GFF5057 0.33 -1.8 159,151 - GFF5057 0.33 -3.0 159,151 - GFF5057 0.33 -0.2 159,151 - GFF5057 0.33 -0.4 159,177 + GFF5057 0.34 -2.2 159,177 + GFF5057 0.34 -2.3 159,177 + GFF5057 0.34 -1.8 159,177 + GFF5057 0.34 -1.3 159,178 - GFF5057 0.34 -1.6 159,178 - GFF5057 0.34 -1.3 159,178 - GFF5057 0.34 -0.7 159,178 - GFF5057 0.34 -1.6 159,178 - GFF5057 0.34 -0.9 159,316 - GFF5057 0.41 -1.7 159,321 + GFF5057 0.41 -1.9 159,321 + GFF5057 0.41 -0.6 159,321 + GFF5057 0.41 -1.3 159,321 + GFF5057 0.41 +0.3 159,321 + GFF5057 0.41 -1.4 159,321 + GFF5057 0.41 -2.7 159,321 + GFF5057 0.41 -2.5 159,321 + GFF5057 0.41 -2.6 159,321 + GFF5057 0.41 -1.6 159,321 + GFF5057 0.41 -1.7 159,321 + GFF5057 0.41 -2.0 159,321 + GFF5057 0.41 -0.7 159,321 + GFF5057 0.41 -1.7 159,321 + GFF5057 0.41 -1.4 159,321 + GFF5057 0.41 -0.8 159,321 + GFF5057 0.41 -3.0 159,322 - GFF5057 0.41 -0.8 159,322 - GFF5057 0.41 -2.4 159,322 - GFF5057 0.41 -1.6 159,322 - GFF5057 0.41 -0.3 159,322 - GFF5057 0.41 -1.7 159,322 - GFF5057 0.41 -2.6 159,322 - GFF5057 0.41 -1.9 159,322 - GFF5057 0.41 -2.3 159,322 - GFF5057 0.41 -1.6 159,322 - GFF5057 0.41 -1.3 159,322 - GFF5057 0.41 -2.0 159,322 - GFF5057 0.41 -1.5 159,322 - GFF5057 0.41 -1.6
Or see this region's nucleotide sequence