Strain Fitness in Variovorax sp. SCN45 around GFF503

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF501 and GFF502 are separated by 4 nucleotidesGFF502 and GFF503 are separated by 17 nucleotidesGFF503 and GFF504 overlap by 4 nucleotidesGFF504 and GFF505 are separated by 24 nucleotides GFF501 - hypothetical protein, at 544,464 to 544,769 GFF501 GFF502 - Hydrolase, at 544,774 to 545,505 GFF502 GFF503 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 545,523 to 546,554 GFF503 GFF504 - SAM-dependent methyltransferases, at 546,551 to 547,399 GFF504 GFF505 - no description, at 547,424 to 547,996 GFF505 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2at 544.578 kb on + strand, within GFF501at 544.578 kb on + strand, within GFF501at 544.578 kb on + strand, within GFF501at 544.579 kb on - strand, within GFF501at 544.704 kb on + strand, within GFF501at 544.734 kb on + strand, within GFF501at 544.734 kb on + strand, within GFF501at 544.735 kb on - strand, within GFF501at 544.735 kb on - strand, within GFF501at 544.747 kb on - strandat 544.767 kb on + strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 544.768 kb on - strandat 545.141 kb on + strand, within GFF502at 545.141 kb on + strand, within GFF502at 545.517 kb on + strandat 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.869 kb on + strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.870 kb on - strand, within GFF504at 546.875 kb on + strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.876 kb on - strand, within GFF504at 546.930 kb on - strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.067 kb on + strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.068 kb on - strand, within GFF504at 547.073 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.115 kb on + strand, within GFF504at 547.116 kb on - strand, within GFF504at 547.116 kb on - strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.275 kb on - strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.373 kb on + strandat 547.373 kb on + strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.480 kb on - strandat 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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544,578 + GFF501 0.37 -0.9
544,578 + GFF501 0.37 +1.8
544,578 + GFF501 0.37 -0.1
544,579 - GFF501 0.38 -0.6
544,704 + GFF501 0.78 -1.9
544,734 + GFF501 0.88 -0.5
544,734 + GFF501 0.88 +0.8
544,735 - GFF501 0.89 -1.3
544,735 - GFF501 0.89 -0.7
544,747 - -0.8
544,767 + -0.7
544,768 - +0.2
544,768 - +0.4
544,768 - -1.4
544,768 - -0.3
544,768 - +0.5
544,768 - +0.9
544,768 - -0.3
544,768 - -0.5
544,768 - -0.5
545,141 + GFF502 0.50 -0.4
545,141 + GFF502 0.50 -1.7
545,517 + -0.7
546,869 + GFF504 0.37 -0.9
546,869 + GFF504 0.37 -0.1
546,869 + GFF504 0.37 +1.3
546,869 + GFF504 0.37 +0.2
546,869 + GFF504 0.37 -0.5
546,870 - GFF504 0.38 -0.1
546,870 - GFF504 0.38 -0.1
546,870 - GFF504 0.38 +0.3
546,870 - GFF504 0.38 -0.3
546,870 - GFF504 0.38 -1.5
546,870 - GFF504 0.38 -1.0
546,875 + GFF504 0.38 -0.8
546,876 - GFF504 0.38 -0.7
546,876 - GFF504 0.38 +0.7
546,876 - GFF504 0.38 +0.0
546,930 - GFF504 0.45 +0.0
547,067 + GFF504 0.61 -1.3
547,067 + GFF504 0.61 +0.5
547,067 + GFF504 0.61 -1.4
547,067 + GFF504 0.61 -0.3
547,067 + GFF504 0.61 -2.2
547,067 + GFF504 0.61 -0.5
547,068 - GFF504 0.61 +1.6
547,068 - GFF504 0.61 -0.2
547,068 - GFF504 0.61 -0.3
547,068 - GFF504 0.61 +0.0
547,073 + GFF504 0.61 +0.3
547,115 + GFF504 0.66 -1.1
547,115 + GFF504 0.66 -1.3
547,115 + GFF504 0.66 -0.4
547,115 + GFF504 0.66 -0.1
547,116 - GFF504 0.67 -0.7
547,116 - GFF504 0.67 -0.3
547,154 + GFF504 0.71 +0.2
547,154 + GFF504 0.71 -2.1
547,155 - GFF504 0.71 -0.5
547,155 - GFF504 0.71 -0.0
547,275 - GFF504 0.85 -0.0
547,280 + GFF504 0.86 +0.5
547,280 + GFF504 0.86 -0.2
547,280 + GFF504 0.86 -0.5
547,280 + GFF504 0.86 -0.0
547,281 - GFF504 0.86 +0.5
547,281 - GFF504 0.86 -0.5
547,281 - GFF504 0.86 +0.2
547,373 + -0.6
547,373 + -0.8
547,374 - -0.1
547,374 - +0.4
547,374 - -0.7
547,374 - +0.8
547,479 + -0.3
547,479 + -0.6
547,479 + -0.3
547,480 - -0.4
547,533 + GFF505 0.19 -1.4
547,533 + GFF505 0.19 +0.3
547,533 + GFF505 0.19 -1.6
547,533 + GFF505 0.19 -0.8
547,534 - GFF505 0.19 -0.1
547,534 - GFF505 0.19 -0.5
547,549 - GFF505 0.22 -0.5
547,549 - GFF505 0.22 -1.9

Or see this region's nucleotide sequence