Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF47 and GFF48 overlap by 4 nucleotides GFF48 and GFF49 are separated by 119 nucleotides GFF49 and GFF50 are separated by 102 nucleotides
GFF47 - DNA double-strand break repair Rad50 ATPase, at 50,354 to 52,993
GFF47
GFF48 - DNA double-strand break repair protein Mre11, at 52,990 to 54,117
GFF48
GFF49 - no description, at 54,237 to 54,428
GFF49
GFF50 - Murein hydrolase activator NlpD, at 54,531 to 55,268
GFF50
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 52.311 kb on + strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.312 kb on - strand, within GFF47 at 52.383 kb on + strand, within GFF47 at 52.383 kb on + strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.384 kb on - strand, within GFF47 at 52.556 kb on - strand, within GFF47 at 52.556 kb on - strand, within GFF47 at 52.928 kb on + strand at 52.928 kb on + strand at 52.928 kb on + strand at 52.929 kb on - strand at 52.929 kb on - strand at 53.375 kb on + strand, within GFF48 at 53.375 kb on + strand, within GFF48 at 53.375 kb on + strand, within GFF48 at 53.492 kb on + strand, within GFF48 at 53.493 kb on - strand, within GFF48 at 53.546 kb on + strand, within GFF48 at 53.547 kb on - strand, within GFF48 at 53.547 kb on - strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.705 kb on + strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 53.706 kb on - strand, within GFF48 at 54.082 kb on + strand at 54.082 kb on + strand at 54.082 kb on + strand at 54.083 kb on - strand at 54.083 kb on - strand at 54.083 kb on - strand at 54.083 kb on - strand at 54.083 kb on - strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.175 kb on + strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.176 kb on - strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.430 kb on + strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.431 kb on - strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.547 kb on + strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.548 kb on - strand at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.694 kb on + strand, within GFF50 at 54.695 kb on - strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.704 kb on + strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.705 kb on - strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.706 kb on + strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.707 kb on - strand, within GFF50 at 54.821 kb on - strand, within GFF50
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 52,311 + GFF47 0.74 -0.0 52,312 - GFF47 0.74 -0.1 52,312 - GFF47 0.74 -0.0 52,312 - GFF47 0.74 -0.4 52,383 + GFF47 0.77 +0.3 52,383 + GFF47 0.77 -0.0 52,384 - GFF47 0.77 +0.4 52,384 - GFF47 0.77 -0.3 52,384 - GFF47 0.77 -0.5 52,556 - GFF47 0.83 -0.4 52,556 - GFF47 0.83 -0.5 52,928 + -0.1 52,928 + +0.7 52,928 + -1.0 52,929 - -0.3 52,929 - -0.3 53,375 + GFF48 0.34 -1.3 53,375 + GFF48 0.34 +0.3 53,375 + GFF48 0.34 -1.7 53,492 + GFF48 0.45 -0.4 53,493 - GFF48 0.45 -0.4 53,546 + GFF48 0.49 +0.0 53,547 - GFF48 0.49 +0.3 53,547 - GFF48 0.49 +0.4 53,705 + GFF48 0.63 +0.4 53,705 + GFF48 0.63 -0.6 53,705 + GFF48 0.63 -0.9 53,706 - GFF48 0.63 -1.2 53,706 - GFF48 0.63 -0.1 53,706 - GFF48 0.63 -0.4 53,706 - GFF48 0.63 -0.5 53,706 - GFF48 0.63 -0.5 53,706 - GFF48 0.63 -0.9 53,706 - GFF48 0.63 -0.6 53,706 - GFF48 0.63 -0.5 53,706 - GFF48 0.63 -0.8 53,706 - GFF48 0.63 -0.7 54,082 + -1.1 54,082 + +0.1 54,082 + +2.0 54,083 - -0.2 54,083 - -0.3 54,083 - +0.4 54,083 - -0.7 54,083 - +0.9 54,175 + +0.9 54,175 + -0.3 54,175 + -0.9 54,175 + -0.0 54,175 + +0.3 54,175 + -0.1 54,175 + -1.1 54,175 + -2.4 54,175 + -0.7 54,175 + +0.6 54,176 - +0.2 54,176 - +0.1 54,176 - -0.0 54,176 - +0.7 54,176 - -0.5 54,176 - +0.5 54,176 - -0.0 54,176 - +1.1 54,176 - -0.9 54,176 - -0.4 54,430 + -1.5 54,430 + -1.5 54,430 + -0.6 54,430 + +0.3 54,430 + -0.2 54,430 + -0.9 54,430 + -0.1 54,430 + -0.5 54,430 + +1.8 54,430 + -1.1 54,430 + +0.8 54,430 + +0.2 54,430 + +0.1 54,430 + -0.7 54,430 + +1.3 54,430 + -0.5 54,431 - +0.0 54,431 - +0.0 54,431 - +0.2 54,431 - -0.5 54,431 - -1.5 54,431 - +1.3 54,431 - -0.7 54,431 - -0.6 54,431 - -0.5 54,431 - -0.1 54,431 - +0.3 54,431 - -0.9 54,431 - -1.2 54,431 - -0.3 54,431 - -0.4 54,547 + -0.3 54,547 + +0.4 54,547 + -0.1 54,547 + +0.3 54,548 - -2.3 54,548 - -0.6 54,548 - -0.3 54,548 - -0.6 54,548 - +0.2 54,548 - +0.0 54,694 + GFF50 0.22 -0.7 54,694 + GFF50 0.22 -0.5 54,694 + GFF50 0.22 -0.0 54,694 + GFF50 0.22 +0.5 54,695 - GFF50 0.22 +1.5 54,704 + GFF50 0.23 -0.8 54,704 + GFF50 0.23 -0.1 54,704 + GFF50 0.23 -0.7 54,704 + GFF50 0.23 +0.4 54,704 + GFF50 0.23 +1.3 54,704 + GFF50 0.23 -0.3 54,704 + GFF50 0.23 +0.1 54,704 + GFF50 0.23 -0.7 54,704 + GFF50 0.23 +0.2 54,705 - GFF50 0.24 -0.3 54,705 - GFF50 0.24 +0.5 54,705 - GFF50 0.24 -0.1 54,705 - GFF50 0.24 -0.7 54,705 - GFF50 0.24 -0.9 54,705 - GFF50 0.24 -0.5 54,705 - GFF50 0.24 +0.2 54,705 - GFF50 0.24 -0.3 54,705 - GFF50 0.24 +0.1 54,705 - GFF50 0.24 +0.4 54,705 - GFF50 0.24 -0.7 54,705 - GFF50 0.24 -0.4 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 +0.0 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -1.9 54,705 - GFF50 0.24 -1.7 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -0.7 54,705 - GFF50 0.24 +0.6 54,705 - GFF50 0.24 +0.0 54,705 - GFF50 0.24 -2.2 54,705 - GFF50 0.24 -0.2 54,705 - GFF50 0.24 -0.3 54,705 - GFF50 0.24 +0.7 54,705 - GFF50 0.24 -0.1 54,706 + GFF50 0.24 -0.3 54,706 + GFF50 0.24 -0.6 54,706 + GFF50 0.24 -0.1 54,706 + GFF50 0.24 -1.5 54,706 + GFF50 0.24 -1.8 54,706 + GFF50 0.24 -1.5 54,706 + GFF50 0.24 +0.0 54,706 + GFF50 0.24 -1.1 54,706 + GFF50 0.24 +0.2 54,706 + GFF50 0.24 -0.3 54,706 + GFF50 0.24 +0.4 54,706 + GFF50 0.24 +3.3 54,706 + GFF50 0.24 -0.5 54,706 + GFF50 0.24 -2.8 54,706 + GFF50 0.24 -0.3 54,706 + GFF50 0.24 -0.6 54,706 + GFF50 0.24 -0.9 54,706 + GFF50 0.24 +0.3 54,706 + GFF50 0.24 +0.2 54,706 + GFF50 0.24 +0.3 54,706 + GFF50 0.24 -0.3 54,706 + GFF50 0.24 +0.9 54,706 + GFF50 0.24 -0.1 54,706 + GFF50 0.24 -1.1 54,706 + GFF50 0.24 -0.3 54,706 + GFF50 0.24 +0.4 54,707 - GFF50 0.24 -0.6 54,707 - GFF50 0.24 +1.7 54,707 - GFF50 0.24 -0.7 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 +0.7 54,707 - GFF50 0.24 -0.5 54,707 - GFF50 0.24 +0.1 54,707 - GFF50 0.24 +0.1 54,707 - GFF50 0.24 -0.7 54,707 - GFF50 0.24 -0.1 54,707 - GFF50 0.24 -0.6 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 +0.6 54,707 - GFF50 0.24 -1.0 54,707 - GFF50 0.24 +0.0 54,707 - GFF50 0.24 -0.3 54,707 - GFF50 0.24 +0.1 54,707 - GFF50 0.24 +0.4 54,707 - GFF50 0.24 -0.6 54,707 - GFF50 0.24 -0.3 54,707 - GFF50 0.24 -0.6 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 +0.3 54,707 - GFF50 0.24 -1.1 54,707 - GFF50 0.24 -0.5 54,707 - GFF50 0.24 +2.7 54,707 - GFF50 0.24 -1.2 54,707 - GFF50 0.24 -0.2 54,707 - GFF50 0.24 -1.9 54,707 - GFF50 0.24 -0.5 54,821 - GFF50 0.39 -0.3
Or see this region's nucleotide sequence