Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4786 and GFF4787 are separated by 13 nucleotides GFF4787 and GFF4788 overlap by 4 nucleotides GFF4788 and GFF4789 are separated by 13 nucleotides GFF4789 and GFF4790 are separated by 87 nucleotides
GFF4786 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 157,016 to 158,479
GFF4786
GFF4787 - ADP-ribosylglycohydrolase family protein, at 158,493 to 159,389
GFF4787
GFF4788 - Uncharacterized protein COG3236, at 159,386 to 159,949
GFF4788
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 158.395 kb on - strand at 158.395 kb on - strand at 158.731 kb on + strand, within GFF4787 at 158.732 kb on - strand, within GFF4787 at 158.771 kb on - strand, within GFF4787 at 158.771 kb on - strand, within GFF4787 at 158.974 kb on + strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 158.975 kb on - strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.130 kb on + strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.131 kb on - strand, within GFF4787 at 159.154 kb on + strand, within GFF4787 at 159.216 kb on + strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.217 kb on - strand, within GFF4787 at 159.373 kb on + strand at 159.374 kb on - strand at 159.783 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 160.231 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.466 kb on - strand, within GFF4789 at 160.611 kb on + strand at 160.612 kb on - strand at 160.617 kb on + strand at 160.618 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.633 kb on - strand at 160.636 kb on - strand at 160.918 kb on - strand, within GFF4790
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 158,395 - -0.8 158,395 - -0.1 158,731 + GFF4787 0.27 -0.0 158,732 - GFF4787 0.27 +0.5 158,771 - GFF4787 0.31 +1.1 158,771 - GFF4787 0.31 -0.9 158,974 + GFF4787 0.54 -0.5 158,975 - GFF4787 0.54 +0.2 158,975 - GFF4787 0.54 -0.3 158,975 - GFF4787 0.54 -0.2 159,130 + GFF4787 0.71 -1.4 159,130 + GFF4787 0.71 +0.3 159,130 + GFF4787 0.71 -0.0 159,130 + GFF4787 0.71 -0.5 159,131 - GFF4787 0.71 -0.5 159,131 - GFF4787 0.71 -0.8 159,154 + GFF4787 0.74 +0.3 159,216 + GFF4787 0.81 -0.3 159,217 - GFF4787 0.81 -0.1 159,217 - GFF4787 0.81 -0.4 159,373 + -0.2 159,374 - -0.3 159,783 + GFF4788 0.70 -0.2 159,882 + GFF4788 0.88 -0.9 159,882 + GFF4788 0.88 -1.8 160,231 + GFF4789 0.43 -0.7 160,348 + GFF4789 0.62 -0.3 160,348 + GFF4789 0.62 -0.1 160,349 - GFF4789 0.62 -1.4 160,349 - GFF4789 0.62 -0.4 160,435 + GFF4789 0.76 -0.1 160,435 + GFF4789 0.76 +0.9 160,466 - GFF4789 0.81 -0.8 160,611 + -1.2 160,612 - +1.3 160,617 + +1.3 160,618 - +0.0 160,630 + -0.1 160,630 + +0.6 160,630 + -0.7 160,630 + +0.6 160,630 + +0.2 160,631 - +0.0 160,631 - -0.4 160,631 - -0.2 160,631 - -1.0 160,631 - -0.3 160,633 - +0.4 160,636 - +0.5 160,918 - GFF4790 0.34 +0.2
Or see this region's nucleotide sequence