Strain Fitness in Variovorax sp. SCN45 around GFF4768

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4767 and GFF4768 are separated by 187 nucleotidesGFF4768 and GFF4769 overlap by 8 nucleotides GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087 GFF4767 GFF4768 - Transcriptional regulator, MarR family, at 135,275 to 135,724 GFF4768 GFF4769 - Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system, at 135,717 to 137,189 GFF4769 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 134.285 kb on + strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.286 kb on - strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.429 kb on + strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.430 kb on - strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.591 kb on + strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.592 kb on - strand, within GFF4767at 134.827 kb on - strand, within GFF4767at 134.827 kb on - strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 135.102 kb on + strandat 135.102 kb on + strandat 135.102 kb on + strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.123 kb on - strandat 135.257 kb on + strandat 135.258 kb on - strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.296 kb on + strandat 135.296 kb on + strandat 135.297 kb on - strandat 135.324 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.371 kb on + strand, within GFF4768at 135.372 kb on - strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.712 kb on + strandat 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.101 kb on + strand, within GFF4769at 136.102 kb on - strand, within GFF4769at 136.102 kb on - strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.680 kb on + strand, within GFF4769at 136.680 kb on + strand, within GFF4769at 136.680 kb on + strand, within GFF4769

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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134,285 + GFF4767 0.54 +0.6
134,286 - GFF4767 0.54 +0.3
134,286 - GFF4767 0.54 +0.3
134,286 - GFF4767 0.54 -0.3
134,429 + GFF4767 0.63 +0.3
134,429 + GFF4767 0.63 +0.8
134,429 + GFF4767 0.63 -1.4
134,429 + GFF4767 0.63 -0.2
134,429 + GFF4767 0.63 -1.1
134,430 - GFF4767 0.63 +0.5
134,430 - GFF4767 0.63 +0.3
134,430 - GFF4767 0.63 -0.7
134,430 - GFF4767 0.63 +0.3
134,591 + GFF4767 0.72 -0.1
134,591 + GFF4767 0.72 -1.1
134,591 + GFF4767 0.72 -1.5
134,591 + GFF4767 0.72 -2.7
134,592 - GFF4767 0.72 -0.1
134,592 - GFF4767 0.72 -0.5
134,592 - GFF4767 0.72 +0.8
134,592 - GFF4767 0.72 -2.7
134,592 - GFF4767 0.72 -0.5
134,592 - GFF4767 0.72 +0.3
134,592 - GFF4767 0.72 -1.5
134,827 - GFF4767 0.85 +0.3
134,827 - GFF4767 0.85 -1.0
134,828 + GFF4767 0.85 -1.0
134,828 + GFF4767 0.85 -0.3
134,829 - GFF4767 0.85 -0.3
134,829 - GFF4767 0.85 -0.2
134,829 - GFF4767 0.85 -0.1
134,829 - GFF4767 0.85 -0.8
134,829 - GFF4767 0.85 -0.0
134,829 - GFF4767 0.85 -0.2
135,102 + -0.4
135,102 + +0.7
135,102 + -1.7
135,103 - -0.7
135,103 - -0.2
135,103 - +0.5
135,103 - +1.7
135,103 - -0.1
135,123 - -0.4
135,257 + -0.2
135,258 - +0.1
135,272 + -0.5
135,272 + +1.3
135,272 + +0.7
135,272 + -2.6
135,272 + +3.7
135,272 + +0.6
135,272 + -0.2
135,272 + +0.1
135,272 + -1.0
135,272 + -1.0
135,272 + -1.5
135,272 + +0.5
135,272 + +0.9
135,272 + -0.1
135,272 + -0.9
135,273 - -1.8
135,273 - -0.1
135,273 - -0.8
135,273 - -0.1
135,273 - -0.6
135,273 - +0.3
135,273 - -0.4
135,273 - +0.0
135,273 - +1.5
135,273 - -0.1
135,273 - +0.7
135,296 + -0.5
135,296 + -1.1
135,297 - +0.3
135,324 + GFF4768 0.11 -0.6
135,336 + GFF4768 0.14 +0.1
135,336 + GFF4768 0.14 +0.3
135,336 + GFF4768 0.14 -1.0
135,371 + GFF4768 0.21 +0.3
135,372 - GFF4768 0.22 -0.2
135,392 + GFF4768 0.26 -1.7
135,392 + GFF4768 0.26 -0.6
135,590 + GFF4768 0.70 -0.4
135,590 + GFF4768 0.70 -0.2
135,590 + GFF4768 0.70 -0.8
135,590 + GFF4768 0.70 -0.7
135,590 + GFF4768 0.70 -0.7
135,590 + GFF4768 0.70 -0.8
135,590 + GFF4768 0.70 -0.8
135,591 - GFF4768 0.70 -0.8
135,591 - GFF4768 0.70 -1.0
135,591 - GFF4768 0.70 +0.3
135,591 - GFF4768 0.70 -0.2
135,591 - GFF4768 0.70 -1.0
135,591 - GFF4768 0.70 -0.1
135,591 - GFF4768 0.70 -0.2
135,662 + GFF4768 0.86 -0.5
135,662 + GFF4768 0.86 +0.0
135,662 + GFF4768 0.86 -0.7
135,662 + GFF4768 0.86 +0.6
135,662 + GFF4768 0.86 -1.0
135,662 + GFF4768 0.86 -0.7
135,662 + GFF4768 0.86 +1.3
135,663 - GFF4768 0.86 -0.4
135,663 - GFF4768 0.86 -0.8
135,663 - GFF4768 0.86 -0.3
135,663 - GFF4768 0.86 -0.5
135,712 + +1.2
136,095 + GFF4769 0.26 +0.2
136,095 + GFF4769 0.26 -1.4
136,095 + GFF4769 0.26 -2.4
136,095 + GFF4769 0.26 +0.1
136,095 + GFF4769 0.26 +0.8
136,095 + GFF4769 0.26 -0.1
136,095 + GFF4769 0.26 -0.5
136,095 + GFF4769 0.26 -0.1
136,095 + GFF4769 0.26 +0.1
136,095 + GFF4769 0.26 +0.3
136,095 + GFF4769 0.26 -1.4
136,095 + GFF4769 0.26 -0.7
136,095 + GFF4769 0.26 -0.9
136,095 + GFF4769 0.26 -0.0
136,095 + GFF4769 0.26 -0.1
136,095 + GFF4769 0.26 -0.3
136,095 + GFF4769 0.26 -0.9
136,095 + GFF4769 0.26 -0.6
136,095 + GFF4769 0.26 -0.3
136,095 + GFF4769 0.26 -0.2
136,095 + GFF4769 0.26 -0.8
136,095 + GFF4769 0.26 -0.7
136,095 + GFF4769 0.26 +0.5
136,095 + GFF4769 0.26 -0.3
136,095 + GFF4769 0.26 +0.9
136,095 + GFF4769 0.26 -0.8
136,096 - GFF4769 0.26 -0.8
136,096 - GFF4769 0.26 +0.2
136,096 - GFF4769 0.26 +0.2
136,096 - GFF4769 0.26 -0.4
136,096 - GFF4769 0.26 +0.2
136,096 - GFF4769 0.26 +0.8
136,096 - GFF4769 0.26 +0.1
136,096 - GFF4769 0.26 +2.2
136,096 - GFF4769 0.26 +0.7
136,096 - GFF4769 0.26 -0.3
136,096 - GFF4769 0.26 -0.2
136,096 - GFF4769 0.26 -0.0
136,096 - GFF4769 0.26 -0.4
136,096 - GFF4769 0.26 -0.5
136,096 - GFF4769 0.26 -1.4
136,096 - GFF4769 0.26 -0.5
136,096 - GFF4769 0.26 -0.2
136,096 - GFF4769 0.26 -1.5
136,101 + GFF4769 0.26 -1.7
136,102 - GFF4769 0.26 -0.4
136,102 - GFF4769 0.26 -0.7
136,284 + GFF4769 0.38 +0.1
136,284 + GFF4769 0.38 +1.3
136,284 + GFF4769 0.38 -1.7
136,284 + GFF4769 0.38 -0.1
136,285 - GFF4769 0.39 +1.0
136,285 - GFF4769 0.39 +0.5
136,285 - GFF4769 0.39 -1.0
136,680 + GFF4769 0.65 +1.0
136,680 + GFF4769 0.65 -0.3
136,680 + GFF4769 0.65 -0.3

Or see this region's nucleotide sequence