Strain Fitness in Variovorax sp. SCN45 around GFF4466

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
105,903	-		GFF4465	0.20	+0.0
105,903	-		GFF4465	0.20	+0.7
105,903	-		GFF4465	0.20	-0.4
105,903	-		GFF4465	0.20	-0.7
106,175	-		GFF4465	0.49	-0.1
106,453	+		GFF4465	0.78	-0.4
106,453	+		GFF4465	0.78	-0.3
106,682	+				-2.3
106,682	+				+0.6
106,682	+				-0.3
106,769	+		GFF4466	0.50	-1.2
106,770	-		GFF4466	0.50	+0.3
106,793	+		GFF4466	0.63	-1.7
106,794	-		GFF4466	0.64	-0.4
106,794	-		GFF4466	0.64	-2.1
106,794	-		GFF4466	0.64	-0.6
106,887	-				+1.1
107,845	+				-1.7
107,845	+				+0.6
107,846	-				-0.2
107,846	-				-0.5