Strain Fitness in Variovorax sp. SCN45 around GFF4187

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
102,478	+				-0.7
102,478	+				-1.1
102,479	-				-0.9
102,479	-				-0.5
102,507	-				-0.6
102,507	-				-2.2
102,602	+		GFF4185	0.18	-0.3
102,602	+		GFF4185	0.18	-0.2
102,728	+		GFF4185	0.38	-0.8
102,728	+		GFF4185	0.38	+1.1
102,728	+		GFF4185	0.38	+0.5
102,729	-		GFF4185	0.38	+0.2
102,729	-		GFF4185	0.38	+0.3
102,732	+		GFF4185	0.38	-0.4
102,732	+		GFF4185	0.38	+0.4
102,732	+		GFF4185	0.38	-1.7
102,733	-		GFF4185	0.39	-1.2
102,733	-		GFF4185	0.39	-0.3
102,733	-		GFF4185	0.39	+1.1
102,733	-		GFF4185	0.39	-0.4
102,733	-		GFF4185	0.39	+0.4
102,733	-		GFF4185	0.39	+0.2
102,733	-		GFF4185	0.39	+0.3
102,734	+		GFF4185	0.39	-1.9
102,735	-		GFF4185	0.39	-0.7
102,735	-		GFF4185	0.39	-0.4
102,981	-		GFF4185	0.78	-0.3
103,031	+		GFF4185	0.85	-0.1
103,031	+		GFF4185	0.85	-1.8
103,425	+		GFF4187	0.11	+0.7
103,459	-		GFF4187	0.24	-0.7
103,618	+		GFF4187	0.87	-0.8
103,618	+		GFF4187	0.87	-2.0
103,710	-				+0.4
103,784	+				-0.0
103,785	-				+0.4
103,785	-				+1.0
103,785	-				-1.5
103,958	+				-0.3
103,958	+				+1.9
103,958	+				+0.1
104,179	+		GFF4188	0.23	-0.3
104,180	-		GFF4188	0.24	-0.3
104,180	-		GFF4188	0.24	-0.3
104,573	-		GFF4188	0.83	-0.9
104,573	-		GFF4188	0.83	-0.5
104,573	-		GFF4188	0.83	+0.2
104,621	+		GFF4188	0.90	+0.4
104,622	-				-1.9