Strain Fitness in Variovorax sp. SCN45 around GFF3755

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3754 and GFF3755 are separated by 249 nucleotidesGFF3755 and GFF3756 are separated by 91 nucleotidesGFF3756 and GFF3757 are separated by 96 nucleotides GFF3754 - Fumarylacetoacetate hydrolase family protein, at 247,914 to 248,852 GFF3754 GFF3755 - Transcriptional regulator, GntR family, at 249,102 to 249,788 GFF3755 GFF3756 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 249,880 to 250,371 GFF3756 GFF3757 - hypothetical protein, at 250,468 to 250,890 GFF3757 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1at 248.270 kb on - strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.320 kb on + strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.321 kb on - strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.482 kb on + strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.483 kb on - strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.542 kb on + strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.543 kb on - strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.578 kb on + strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.579 kb on - strand, within GFF3754at 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.776 kb on + strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.777 kb on - strandat 248.827 kb on + strandat 249.370 kb on + strand, within GFF3755at 249.370 kb on + strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.371 kb on - strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.406 kb on + strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.407 kb on - strand, within GFF3755at 249.847 kb on + strandat 249.862 kb on + strandat 249.862 kb on + strandat 249.863 kb on - strandat 249.881 kb on + strandat 249.881 kb on + strandat 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.932 kb on + strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 249.933 kb on - strand, within GFF3756at 250.028 kb on + strand, within GFF3756at 250.029 kb on - strand, within GFF3756at 250.029 kb on - strand, within GFF3756at 250.029 kb on - strand, within GFF3756at 250.029 kb on - strand, within GFF3756at 250.410 kb on - strandat 250.411 kb on + strandat 250.412 kb on - strandat 250.412 kb on - strandat 250.418 kb on + strandat 250.418 kb on + strandat 250.418 kb on + strandat 250.418 kb on + strandat 250.418 kb on + strandat 250.419 kb on - strandat 250.419 kb on - strandat 250.419 kb on - strandat 250.419 kb on - strandat 250.454 kb on + strandat 250.454 kb on + strandat 250.455 kb on - strandat 250.526 kb on + strand, within GFF3757at 250.526 kb on + strand, within GFF3757at 250.526 kb on + strand, within GFF3757at 250.526 kb on + strand, within GFF3757at 250.548 kb on - strand, within GFF3757at 250.691 kb on + strand, within GFF3757at 250.691 kb on + strand, within GFF3757at 250.691 kb on + strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757at 250.692 kb on - strand, within GFF3757

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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248,270 - GFF3754 0.38 +0.3
248,320 + GFF3754 0.43 -0.6
248,320 + GFF3754 0.43 -0.4
248,320 + GFF3754 0.43 -0.9
248,320 + GFF3754 0.43 -1.3
248,320 + GFF3754 0.43 -0.2
248,320 + GFF3754 0.43 -0.5
248,320 + GFF3754 0.43 -1.4
248,320 + GFF3754 0.43 -0.3
248,320 + GFF3754 0.43 +0.4
248,321 - GFF3754 0.43 -0.1
248,321 - GFF3754 0.43 +0.3
248,321 - GFF3754 0.43 -0.6
248,321 - GFF3754 0.43 -0.3
248,321 - GFF3754 0.43 -0.1
248,321 - GFF3754 0.43 -1.0
248,321 - GFF3754 0.43 -0.3
248,321 - GFF3754 0.43 -0.3
248,482 + GFF3754 0.60 -0.7
248,482 + GFF3754 0.60 +0.9
248,482 + GFF3754 0.60 -0.3
248,482 + GFF3754 0.60 -2.6
248,482 + GFF3754 0.60 -0.2
248,482 + GFF3754 0.60 -1.6
248,482 + GFF3754 0.60 -0.0
248,482 + GFF3754 0.60 -2.0
248,482 + GFF3754 0.60 -0.8
248,482 + GFF3754 0.60 +0.5
248,482 + GFF3754 0.60 -0.2
248,482 + GFF3754 0.60 -0.3
248,482 + GFF3754 0.60 -0.6
248,482 + GFF3754 0.60 -0.3
248,482 + GFF3754 0.60 -0.7
248,482 + GFF3754 0.60 -0.9
248,482 + GFF3754 0.60 -0.7
248,482 + GFF3754 0.60 -0.9
248,482 + GFF3754 0.60 -0.4
248,482 + GFF3754 0.60 -0.2
248,482 + GFF3754 0.60 -0.1
248,482 + GFF3754 0.60 +0.7
248,482 + GFF3754 0.60 +0.8
248,482 + GFF3754 0.60 -0.9
248,482 + GFF3754 0.60 +1.2
248,482 + GFF3754 0.60 -0.4
248,482 + GFF3754 0.60 +0.1
248,482 + GFF3754 0.60 -0.3
248,483 - GFF3754 0.61 -2.1
248,483 - GFF3754 0.61 -0.1
248,483 - GFF3754 0.61 -1.7
248,483 - GFF3754 0.61 -0.3
248,483 - GFF3754 0.61 -0.6
248,483 - GFF3754 0.61 -1.2
248,483 - GFF3754 0.61 -0.4
248,483 - GFF3754 0.61 -0.3
248,483 - GFF3754 0.61 -0.5
248,483 - GFF3754 0.61 +0.7
248,483 - GFF3754 0.61 -0.4
248,483 - GFF3754 0.61 -1.5
248,483 - GFF3754 0.61 +0.4
248,483 - GFF3754 0.61 -0.1
248,483 - GFF3754 0.61 -0.2
248,483 - GFF3754 0.61 +1.1
248,483 - GFF3754 0.61 -0.5
248,483 - GFF3754 0.61 -0.9
248,483 - GFF3754 0.61 -1.6
248,483 - GFF3754 0.61 +1.0
248,483 - GFF3754 0.61 -0.2
248,542 + GFF3754 0.67 -1.7
248,542 + GFF3754 0.67 +0.2
248,542 + GFF3754 0.67 -0.4
248,542 + GFF3754 0.67 -0.5
248,542 + GFF3754 0.67 -0.1
248,542 + GFF3754 0.67 -0.4
248,542 + GFF3754 0.67 -0.2
248,542 + GFF3754 0.67 -0.1
248,542 + GFF3754 0.67 -0.1
248,543 - GFF3754 0.67 +1.7
248,543 - GFF3754 0.67 +0.4
248,543 - GFF3754 0.67 +0.4
248,543 - GFF3754 0.67 -0.4
248,543 - GFF3754 0.67 -0.1
248,543 - GFF3754 0.67 -0.8
248,543 - GFF3754 0.67 +0.4
248,543 - GFF3754 0.67 -0.1
248,543 - GFF3754 0.67 -0.4
248,578 + GFF3754 0.71 -0.6
248,578 + GFF3754 0.71 +0.8
248,579 - GFF3754 0.71 -0.1
248,579 - GFF3754 0.71 +0.1
248,579 - GFF3754 0.71 -0.6
248,579 - GFF3754 0.71 -1.8
248,579 - GFF3754 0.71 -0.8
248,776 + +0.5
248,776 + -1.9
248,776 + -0.5
248,776 + -0.6
248,777 - -0.1
248,777 - -1.8
248,777 - -0.2
248,777 - -0.3
248,827 + -0.9
249,370 + GFF3755 0.39 -0.6
249,370 + GFF3755 0.39 -0.9
249,371 - GFF3755 0.39 -0.2
249,371 - GFF3755 0.39 +0.8
249,371 - GFF3755 0.39 -1.0
249,371 - GFF3755 0.39 +1.7
249,371 - GFF3755 0.39 -1.5
249,371 - GFF3755 0.39 -0.5
249,406 + GFF3755 0.44 -0.8
249,406 + GFF3755 0.44 +0.3
249,406 + GFF3755 0.44 -0.7
249,406 + GFF3755 0.44 +0.2
249,406 + GFF3755 0.44 +0.5
249,406 + GFF3755 0.44 -0.9
249,406 + GFF3755 0.44 +1.1
249,406 + GFF3755 0.44 -0.6
249,407 - GFF3755 0.44 +0.3
249,407 - GFF3755 0.44 -1.1
249,407 - GFF3755 0.44 +0.0
249,407 - GFF3755 0.44 -0.5
249,407 - GFF3755 0.44 -0.2
249,847 + +0.2
249,862 + +0.7
249,862 + +0.4
249,863 - -0.3
249,881 + +0.5
249,881 + +0.5
249,932 + GFF3756 0.11 -0.2
249,932 + GFF3756 0.11 +1.4
249,932 + GFF3756 0.11 -0.1
249,932 + GFF3756 0.11 -0.2
249,932 + GFF3756 0.11 -0.5
249,932 + GFF3756 0.11 +0.1
249,932 + GFF3756 0.11 -0.6
249,932 + GFF3756 0.11 -0.2
249,932 + GFF3756 0.11 -0.4
249,932 + GFF3756 0.11 -0.3
249,932 + GFF3756 0.11 +0.4
249,933 - GFF3756 0.11 -0.6
249,933 - GFF3756 0.11 -0.5
249,933 - GFF3756 0.11 -0.1
249,933 - GFF3756 0.11 +0.2
249,933 - GFF3756 0.11 -0.5
249,933 - GFF3756 0.11 -1.6
249,933 - GFF3756 0.11 +0.6
249,933 - GFF3756 0.11 -1.6
249,933 - GFF3756 0.11 -0.5
249,933 - GFF3756 0.11 +0.0
249,933 - GFF3756 0.11 -0.1
249,933 - GFF3756 0.11 +0.6
250,028 + GFF3756 0.30 +0.4
250,029 - GFF3756 0.30 -0.3
250,029 - GFF3756 0.30 -0.1
250,029 - GFF3756 0.30 -0.4
250,029 - GFF3756 0.30 -1.5
250,410 - -1.3
250,411 + +0.6
250,412 - +0.8
250,412 - +0.0
250,418 + -0.7
250,418 + -0.5
250,418 + +0.8
250,418 + +0.4
250,418 + +0.2
250,419 - -1.0
250,419 - +0.0
250,419 - -0.3
250,419 - -0.3
250,454 + -0.7
250,454 + +0.2
250,455 - -0.1
250,526 + GFF3757 0.14 -0.3
250,526 + GFF3757 0.14 +0.5
250,526 + GFF3757 0.14 +0.8
250,526 + GFF3757 0.14 -0.2
250,548 - GFF3757 0.19 -0.5
250,691 + GFF3757 0.53 -2.4
250,691 + GFF3757 0.53 +1.1
250,691 + GFF3757 0.53 -1.5
250,692 - GFF3757 0.53 -0.5
250,692 - GFF3757 0.53 -0.9
250,692 - GFF3757 0.53 -0.4
250,692 - GFF3757 0.53 +0.3
250,692 - GFF3757 0.53 -0.9
250,692 - GFF3757 0.53 -0.2
250,692 - GFF3757 0.53 +0.1
250,692 - GFF3757 0.53 -1.3
250,692 - GFF3757 0.53 -0.1

Or see this region's nucleotide sequence