Strain Fitness in Variovorax sp. SCN45 around GFF3729

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3727 and GFF3728 are separated by 168 nucleotidesGFF3728 and GFF3729 are separated by 27 nucleotidesGFF3729 and GFF3730 are separated by 119 nucleotides GFF3727 - Transcriptional regulator, AcrR family, at 226,520 to 227,161 GFF3727 GFF3728 - no description, at 227,330 to 227,557 GFF3728 GFF3729 - Transcriptional regulator, AraC family, at 227,585 to 228,352 GFF3729 GFF3730 - Integral membrane protein, at 228,472 to 229,290 GFF3730 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.758 kb on + strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.848 kb on - strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.162 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.661 kb on + strandat 227.661 kb on + strandat 227.661 kb on + strandat 227.991 kb on + strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 228.099 kb on + strand, within GFF3729at 228.099 kb on + strand, within GFF3729at 228.231 kb on + strand, within GFF3729at 228.231 kb on + strand, within GFF3729at 228.296 kb on + strandat 228.296 kb on + strandat 228.297 kb on - strandat 228.393 kb on + strandat 228.393 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.823 kb on + strand, within GFF3730at 228.824 kb on - strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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226,637 + GFF3727 0.18 -1.2
226,637 + GFF3727 0.18 +2.3
226,637 + GFF3727 0.18 +0.1
226,637 + GFF3727 0.18 +0.7
226,637 + GFF3727 0.18 -1.8
226,637 + GFF3727 0.18 -0.6
226,638 - GFF3727 0.18 -2.0
226,638 - GFF3727 0.18 -1.3
226,638 - GFF3727 0.18 -0.5
226,638 - GFF3727 0.18 -0.6
226,758 + GFF3727 0.37 -0.6
226,759 - GFF3727 0.37 -1.5
226,759 - GFF3727 0.37 -1.1
226,759 - GFF3727 0.37 -1.1
226,759 - GFF3727 0.37 -0.1
226,847 + GFF3727 0.51 -0.1
226,847 + GFF3727 0.51 -0.1
226,847 + GFF3727 0.51 -0.3
226,848 - GFF3727 0.51 +2.7
227,084 + GFF3727 0.88 -0.2
227,084 + GFF3727 0.88 +1.1
227,084 + GFF3727 0.88 -0.6
227,084 + GFF3727 0.88 +0.1
227,084 + GFF3727 0.88 -0.7
227,084 + GFF3727 0.88 -0.4
227,085 - GFF3727 0.88 -0.7
227,085 - GFF3727 0.88 -1.6
227,162 + -1.4
227,280 + -1.6
227,280 + -0.1
227,280 + +0.4
227,280 + -0.2
227,280 + +0.0
227,280 + +0.5
227,280 + -0.3
227,280 + -1.0
227,280 + -0.8
227,280 + +0.4
227,280 + -1.2
227,280 + +0.1
227,281 - -1.9
227,281 - -0.3
227,281 - -1.5
227,281 - +0.5
227,281 - +0.4
227,281 - -0.2
227,281 - +1.1
227,281 - -0.1
227,281 - +0.5
227,281 - +1.2
227,281 - -0.2
227,281 - -2.4
227,281 - -1.2
227,281 - +0.1
227,281 - -2.5
227,281 - +1.4
227,661 + +0.1
227,661 + +2.6
227,661 + -0.6
227,991 + GFF3729 0.53 -0.0
227,992 - GFF3729 0.53 +4.3
227,992 - GFF3729 0.53 +0.1
227,992 - GFF3729 0.53 +1.1
228,099 + GFF3729 0.67 -0.8
228,099 + GFF3729 0.67 -0.2
228,231 + GFF3729 0.84 -0.5
228,231 + GFF3729 0.84 -0.4
228,296 + -1.3
228,296 + -1.3
228,297 - -0.8
228,393 + -0.3
228,393 + +1.3
228,433 + +0.7
228,433 + +0.2
228,433 + -0.6
228,433 + -2.0
228,433 + -1.4
228,433 + +0.3
228,434 - -0.5
228,434 - +0.1
228,434 - -0.5
228,434 - -0.2
228,434 - -0.8
228,434 - -0.6
228,481 + -0.8
228,481 + -1.6
228,481 + +0.7
228,481 + -0.8
228,481 + +0.2
228,481 + -1.1
228,481 + +0.0
228,481 + -0.5
228,482 - -0.5
228,482 - -0.1
228,482 - -0.4
228,482 - -0.3
228,482 - -0.3
228,482 - +0.1
228,823 + GFF3730 0.43 -1.4
228,824 - GFF3730 0.43 +1.4
229,081 + GFF3730 0.74 -0.6
229,081 + GFF3730 0.74 +0.1
229,081 + GFF3730 0.74 -0.3
229,081 + GFF3730 0.74 -0.4
229,081 + GFF3730 0.74 +0.1
229,082 - GFF3730 0.74 -0.1
229,082 - GFF3730 0.74 -0.5
229,082 - GFF3730 0.74 +1.4
229,082 - GFF3730 0.74 +0.2
229,082 - GFF3730 0.74 +0.7
229,082 - GFF3730 0.74 -0.2
229,082 - GFF3730 0.74 +0.2
229,082 - GFF3730 0.74 -0.6
229,082 - GFF3730 0.74 -0.2
229,082 - GFF3730 0.74 +1.5
229,244 - +1.7

Or see this region's nucleotide sequence