Strain Fitness in Variovorax sp. SCN45 around GFF3555

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3554 and GFF3555 overlap by 4 nucleotidesGFF3555 and GFF3556 are separated by 76 nucleotides GFF3554 - FIG01121542: hypothetical protein, at 62,677 to 65,034 GFF3554 GFF3555 - Mg-chelatase subunit ChlD, at 65,031 to 66,245 GFF3555 GFF3556 - BUG/TctC family periplasmic protein, at 66,322 to 67,314 GFF3556 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.186 kb on + strand, within GFF3554at 65.190 kb on + strand, within GFF3555at 65.190 kb on + strand, within GFF3555at 65.190 kb on + strand, within GFF3555at 65.191 kb on - strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.293 kb on - strand, within GFF3555at 65.637 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 66.088 kb on - strand, within GFF3555at 66.296 kb on + strandat 66.296 kb on + strandat 66.297 kb on - strandat 66.652 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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64,186 + GFF3554 0.64 -1.1
65,190 + GFF3555 0.13 -0.4
65,190 + GFF3555 0.13 -0.1
65,190 + GFF3555 0.13 +0.8
65,191 - GFF3555 0.13 +0.3
65,292 + GFF3555 0.21 +1.8
65,292 + GFF3555 0.21 -0.6
65,292 + GFF3555 0.21 -0.2
65,292 + GFF3555 0.21 +0.2
65,292 + GFF3555 0.21 +2.0
65,293 - GFF3555 0.22 -0.1
65,637 + GFF3555 0.50 -0.3
65,751 + GFF3555 0.59 +0.1
65,751 + GFF3555 0.59 -3.1
65,751 + GFF3555 0.59 +0.7
65,751 + GFF3555 0.59 +0.3
65,751 + GFF3555 0.59 -0.2
65,751 + GFF3555 0.59 -1.2
65,752 - GFF3555 0.59 -0.5
65,752 - GFF3555 0.59 -0.0
65,752 - GFF3555 0.59 -0.2
65,920 - GFF3555 0.73 +1.9
65,920 - GFF3555 0.73 -0.0
65,920 - GFF3555 0.73 -0.3
65,979 + GFF3555 0.78 -1.1
65,979 + GFF3555 0.78 +0.6
65,979 + GFF3555 0.78 +1.0
65,979 + GFF3555 0.78 +1.0
65,979 + GFF3555 0.78 +0.1
65,979 + GFF3555 0.78 +0.7
65,979 + GFF3555 0.78 +0.1
65,979 + GFF3555 0.78 -1.3
65,980 - GFF3555 0.78 -0.1
65,980 - GFF3555 0.78 -0.5
65,980 - GFF3555 0.78 -0.3
65,980 - GFF3555 0.78 +0.2
66,088 - GFF3555 0.87 -0.7
66,296 + +0.3
66,296 + -1.1
66,297 - +0.1
66,652 + GFF3556 0.33 -0.1
66,667 + GFF3556 0.35 -1.2
66,667 + GFF3556 0.35 -0.3
66,667 + GFF3556 0.35 +0.7
66,667 + GFF3556 0.35 +1.0
66,667 + GFF3556 0.35 -0.5
66,667 + GFF3556 0.35 -0.4
66,667 + GFF3556 0.35 +0.5
66,667 + GFF3556 0.35 -0.9
66,668 - GFF3556 0.35 +0.4
66,668 - GFF3556 0.35 -1.1
66,668 - GFF3556 0.35 +0.9
66,668 - GFF3556 0.35 -0.1
66,668 - GFF3556 0.35 -0.9
66,668 - GFF3556 0.35 -0.3
66,668 - GFF3556 0.35 +0.2
66,668 - GFF3556 0.35 -2.0
66,668 - GFF3556 0.35 -1.0
66,668 - GFF3556 0.35 -2.9

Or see this region's nucleotide sequence