Strain Fitness in Variovorax sp. SCN45 around GFF3391

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3390 and GFF3391 are separated by 139 nucleotidesGFF3391 and GFF3392 are separated by 106 nucleotides GFF3390 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 211,138 to 213,063 GFF3390 GFF3391 - Chlorogenate esterase, at 213,203 to 215,116 GFF3391 GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101 GFF3392 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2 3at 212.465 kb on + strand, within GFF3390at 212.465 kb on + strand, within GFF3390at 212.466 kb on - strand, within GFF3390at 212.466 kb on - strand, within GFF3390at 212.466 kb on - strand, within GFF3390at 212.466 kb on - strand, within GFF3390at 212.711 kb on + strand, within GFF3390at 212.712 kb on - strand, within GFF3390at 212.712 kb on - strand, within GFF3390at 212.712 kb on - strand, within GFF3390at 212.712 kb on - strand, within GFF3390at 212.759 kb on + strand, within GFF3390at 212.759 kb on + strand, within GFF3390at 212.760 kb on - strand, within GFF3390at 212.760 kb on - strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.801 kb on + strand, within GFF3390at 212.802 kb on - strand, within GFF3390at 212.825 kb on + strand, within GFF3390at 212.825 kb on + strand, within GFF3390at 212.825 kb on + strand, within GFF3390at 212.825 kb on + strand, within GFF3390at 212.826 kb on - strand, within GFF3390at 213.026 kb on + strandat 213.026 kb on + strandat 213.027 kb on - strandat 213.027 kb on - strandat 213.216 kb on + strandat 213.216 kb on + strandat 213.217 kb on - strandat 213.217 kb on - strandat 213.267 kb on + strandat 213.472 kb on - strand, within GFF3391at 213.477 kb on + strand, within GFF3391at 213.528 kb on + strand, within GFF3391at 213.528 kb on + strand, within GFF3391at 213.529 kb on - strand, within GFF3391at 213.529 kb on - strand, within GFF3391at 213.531 kb on + strand, within GFF3391at 213.531 kb on + strand, within GFF3391at 213.532 kb on - strand, within GFF3391at 213.532 kb on - strand, within GFF3391at 213.579 kb on + strand, within GFF3391at 213.579 kb on + strand, within GFF3391at 213.580 kb on - strand, within GFF3391at 213.699 kb on + strand, within GFF3391at 213.699 kb on + strand, within GFF3391at 213.700 kb on - strand, within GFF3391at 213.700 kb on - strand, within GFF3391at 213.700 kb on - strand, within GFF3391at 213.981 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.089 kb on + strand, within GFF3391at 214.090 kb on - strand, within GFF3391at 214.090 kb on - strand, within GFF3391at 214.239 kb on + strand, within GFF3391at 214.240 kb on - strand, within GFF3391at 214.369 kb on - strand, within GFF3391at 214.374 kb on + strand, within GFF3391at 214.374 kb on + strand, within GFF3391at 214.375 kb on - strand, within GFF3391at 214.375 kb on - strand, within GFF3391at 214.375 kb on - strand, within GFF3391at 214.392 kb on + strand, within GFF3391at 214.392 kb on + strand, within GFF3391at 214.392 kb on + strand, within GFF3391at 215.137 kb on - strandat 215.137 kb on - strandat 215.137 kb on - strandat 215.137 kb on - strandat 215.171 kb on + strandat 215.383 kb on + strand, within GFF3392at 215.383 kb on + strand, within GFF3392at 215.384 kb on - strand, within GFF3392at 215.509 kb on + strand, within GFF3392at 215.509 kb on + strand, within GFF3392at 215.509 kb on + strand, within GFF3392at 215.509 kb on + strand, within GFF3392at 215.510 kb on - strand, within GFF3392at 215.510 kb on - strand, within GFF3392at 215.510 kb on - strand, within GFF3392at 215.510 kb on - strand, within GFF3392at 215.510 kb on - strand, within GFF3392at 215.590 kb on + strand, within GFF3392at 215.590 kb on + strand, within GFF3392at 215.590 kb on + strand, within GFF3392at 215.591 kb on - strand, within GFF3392at 215.823 kb on + strand, within GFF3392at 215.824 kb on - strand, within GFF3392at 215.830 kb on + strand, within GFF3392at 215.953 kb on + strand, within GFF3392at 215.953 kb on + strand, within GFF3392at 215.953 kb on + strand, within GFF3392at 215.954 kb on - strand, within GFF3392at 215.954 kb on - strand, within GFF3392at 215.954 kb on - strand, within GFF3392at 215.954 kb on - strand, within GFF3392

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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212,465 + GFF3390 0.69 +0.3
212,465 + GFF3390 0.69 +0.4
212,466 - GFF3390 0.69 -0.5
212,466 - GFF3390 0.69 +0.5
212,466 - GFF3390 0.69 -0.4
212,466 - GFF3390 0.69 -0.8
212,711 + GFF3390 0.82 +1.1
212,712 - GFF3390 0.82 -1.6
212,712 - GFF3390 0.82 -0.4
212,712 - GFF3390 0.82 +0.3
212,712 - GFF3390 0.82 -1.3
212,759 + GFF3390 0.84 -0.5
212,759 + GFF3390 0.84 +0.4
212,760 - GFF3390 0.84 -0.1
212,760 - GFF3390 0.84 -0.3
212,801 + GFF3390 0.86 +1.2
212,801 + GFF3390 0.86 +0.5
212,801 + GFF3390 0.86 +0.5
212,801 + GFF3390 0.86 +0.3
212,801 + GFF3390 0.86 -0.9
212,801 + GFF3390 0.86 -0.0
212,801 + GFF3390 0.86 -0.4
212,802 - GFF3390 0.86 -0.9
212,825 + GFF3390 0.88 -0.4
212,825 + GFF3390 0.88 -0.0
212,825 + GFF3390 0.88 -1.2
212,825 + GFF3390 0.88 +0.7
212,826 - GFF3390 0.88 -0.0
213,026 + -2.6
213,026 + +1.8
213,027 - -2.3
213,027 - +0.0
213,216 + -0.3
213,216 + -0.6
213,217 - +0.9
213,217 - -0.1
213,267 + +0.0
213,472 - GFF3391 0.14 +0.3
213,477 + GFF3391 0.14 +0.1
213,528 + GFF3391 0.17 +0.8
213,528 + GFF3391 0.17 -1.1
213,529 - GFF3391 0.17 +0.6
213,529 - GFF3391 0.17 -0.1
213,531 + GFF3391 0.17 -0.1
213,531 + GFF3391 0.17 -0.4
213,532 - GFF3391 0.17 -0.2
213,532 - GFF3391 0.17 +0.1
213,579 + GFF3391 0.20 -2.2
213,579 + GFF3391 0.20 +1.0
213,580 - GFF3391 0.20 -0.4
213,699 + GFF3391 0.26 +0.3
213,699 + GFF3391 0.26 -0.9
213,700 - GFF3391 0.26 -0.6
213,700 - GFF3391 0.26 +0.3
213,700 - GFF3391 0.26 +2.1
213,981 + GFF3391 0.41 -2.1
214,089 + GFF3391 0.46 +0.2
214,089 + GFF3391 0.46 -0.9
214,089 + GFF3391 0.46 -1.5
214,089 + GFF3391 0.46 -0.8
214,089 + GFF3391 0.46 -0.8
214,089 + GFF3391 0.46 -0.1
214,090 - GFF3391 0.46 +0.2
214,090 - GFF3391 0.46 +1.3
214,239 + GFF3391 0.54 -0.0
214,240 - GFF3391 0.54 -0.4
214,369 - GFF3391 0.61 +0.1
214,374 + GFF3391 0.61 +0.5
214,374 + GFF3391 0.61 -1.1
214,375 - GFF3391 0.61 -1.1
214,375 - GFF3391 0.61 -1.0
214,375 - GFF3391 0.61 -0.8
214,392 + GFF3391 0.62 +0.8
214,392 + GFF3391 0.62 +1.1
214,392 + GFF3391 0.62 -1.2
215,137 - -0.1
215,137 - +2.8
215,137 - +0.1
215,137 - +0.2
215,171 + +1.1
215,383 + GFF3392 0.18 +0.0
215,383 + GFF3392 0.18 -0.3
215,384 - GFF3392 0.18 -1.6
215,509 + GFF3392 0.33 -1.6
215,509 + GFF3392 0.33 -0.6
215,509 + GFF3392 0.33 +0.1
215,509 + GFF3392 0.33 -0.5
215,510 - GFF3392 0.33 +0.8
215,510 - GFF3392 0.33 +0.0
215,510 - GFF3392 0.33 +0.3
215,510 - GFF3392 0.33 +0.5
215,510 - GFF3392 0.33 +2.2
215,590 + GFF3392 0.42 -0.5
215,590 + GFF3392 0.42 -0.5
215,590 + GFF3392 0.42 +0.9
215,591 - GFF3392 0.42 +0.2
215,823 + GFF3392 0.68 -0.2
215,824 - GFF3392 0.68 +0.2
215,830 + GFF3392 0.69 +1.0
215,953 + GFF3392 0.83 +1.0
215,953 + GFF3392 0.83 -1.4
215,953 + GFF3392 0.83 -0.1
215,954 - GFF3392 0.83 -1.0
215,954 - GFF3392 0.83 -0.3
215,954 - GFF3392 0.83 +0.1
215,954 - GFF3392 0.83 -0.4

Or see this region's nucleotide sequence