Strain Fitness in Variovorax sp. SCN45 around GFF3309

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3308 and GFF3309 overlap by 4 nucleotidesGFF3309 and GFF3310 are separated by 20 nucleotides GFF3308 - Inner membrane protein CreD, at 132,827 to 134,290 GFF3308 GFF3309 - Beta-hexosaminidase (EC 3.2.1.52), at 134,287 to 135,579 GFF3309 GFF3310 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 135,600 to 138,002 GFF3310 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.839 kb on - strand, within GFF3308at 133.865 kb on + strand, within GFF3308at 133.865 kb on + strand, within GFF3308at 133.865 kb on + strand, within GFF3308at 133.865 kb on + strand, within GFF3308at 133.866 kb on - strand, within GFF3308at 133.866 kb on - strand, within GFF3308at 133.866 kb on - strand, within GFF3308at 133.949 kb on + strand, within GFF3308at 133.949 kb on + strand, within GFF3308at 134.031 kb on - strand, within GFF3308at 134.072 kb on + strand, within GFF3308at 134.073 kb on - strand, within GFF3308at 134.138 kb on + strand, within GFF3308at 134.138 kb on + strand, within GFF3308at 134.138 kb on + strand, within GFF3308at 134.138 kb on + strand, within GFF3308at 134.138 kb on + strand, within GFF3308at 134.139 kb on - strand, within GFF3308at 134.139 kb on - strand, within GFF3308at 134.150 kb on + strandat 134.151 kb on - strandat 134.151 kb on - strandat 134.151 kb on - strandat 134.151 kb on - strandat 134.253 kb on - strandat 134.253 kb on - strandat 134.253 kb on - strandat 134.269 kb on + strandat 134.611 kb on + strand, within GFF3309at 134.612 kb on - strand, within GFF3309at 134.899 kb on + strand, within GFF3309at 134.933 kb on + strand, within GFF3309at 134.933 kb on + strand, within GFF3309at 134.933 kb on + strand, within GFF3309at 134.934 kb on - strand, within GFF3309at 134.934 kb on - strand, within GFF3309at 135.060 kb on - strand, within GFF3309at 135.346 kb on + strand, within GFF3309at 135.346 kb on + strand, within GFF3309at 135.347 kb on - strand, within GFF3309at 135.391 kb on + strand, within GFF3309at 135.391 kb on + strand, within GFF3309at 135.392 kb on - strand, within GFF3309at 135.392 kb on - strand, within GFF3309at 135.460 kb on + strandat 135.461 kb on - strandat 135.461 kb on - strandat 135.461 kb on - strandat 135.461 kb on - strandat 135.475 kb on + strandat 135.475 kb on + strandat 135.475 kb on + strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.476 kb on - strandat 135.578 kb on - strandat 135.578 kb on - strandat 135.581 kb on + strandat 135.581 kb on + strandat 135.581 kb on + strandat 135.582 kb on - strandat 135.588 kb on + strandat 135.589 kb on - strandat 135.589 kb on - strandat 135.599 kb on + strandat 135.599 kb on + strandat 135.599 kb on + strandat 135.599 kb on + strandat 135.600 kb on - strandat 135.600 kb on - strandat 135.600 kb on - strandat 135.600 kb on - strandat 135.600 kb on - strandat 135.759 kb on + strandat 135.759 kb on + strandat 135.759 kb on + strandat 135.759 kb on + strandat 135.759 kb on + strandat 135.759 kb on + strandat 135.760 kb on - strandat 135.795 kb on + strandat 135.822 kb on + strandat 135.822 kb on + strandat 135.823 kb on - strandat 135.942 kb on + strand, within GFF3310at 135.942 kb on + strand, within GFF3310at 135.942 kb on + strand, within GFF3310at 135.943 kb on - strand, within GFF3310at 135.943 kb on - strand, within GFF3310at 135.943 kb on - strand, within GFF3310at 135.943 kb on - strand, within GFF3310at 135.963 kb on + strand, within GFF3310at 135.963 kb on + strand, within GFF3310at 135.963 kb on + strand, within GFF3310at 135.964 kb on - strand, within GFF3310at 135.964 kb on - strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.056 kb on + strand, within GFF3310at 136.057 kb on - strand, within GFF3310at 136.057 kb on - strand, within GFF3310at 136.057 kb on - strand, within GFF3310at 136.057 kb on - strand, within GFF3310at 136.092 kb on + strand, within GFF3310at 136.093 kb on - strand, within GFF3310at 136.093 kb on - strand, within GFF3310at 136.093 kb on - strand, within GFF3310at 136.093 kb on - strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.099 kb on + strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.100 kb on - strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.155 kb on + strand, within GFF3310at 136.156 kb on - strand, within GFF3310at 136.156 kb on - strand, within GFF3310at 136.156 kb on - strand, within GFF3310at 136.156 kb on - strand, within GFF3310at 136.170 kb on + strand, within GFF3310at 136.170 kb on + strand, within GFF3310at 136.170 kb on + strand, within GFF3310at 136.170 kb on + strand, within GFF3310at 136.170 kb on + strand, within GFF3310at 136.171 kb on - strand, within GFF3310at 136.171 kb on - strand, within GFF3310at 136.171 kb on - strand, within GFF3310at 136.171 kb on - strand, within GFF3310at 136.188 kb on + strand, within GFF3310at 136.189 kb on - strand, within GFF3310at 136.189 kb on - strand, within GFF3310at 136.215 kb on + strand, within GFF3310at 136.215 kb on + strand, within GFF3310at 136.215 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.338 kb on + strand, within GFF3310at 136.339 kb on - strand, within GFF3310at 136.339 kb on - strand, within GFF3310at 136.339 kb on - strand, within GFF3310at 136.342 kb on + strand, within GFF3310at 136.342 kb on + strand, within GFF3310at 136.342 kb on + strand, within GFF3310at 136.342 kb on + strand, within GFF3310at 136.343 kb on - strand, within GFF3310at 136.455 kb on + strand, within GFF3310at 136.456 kb on - strand, within GFF3310at 136.456 kb on - strand, within GFF3310at 136.456 kb on - strand, within GFF3310at 136.456 kb on - strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.485 kb on + strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.486 kb on - strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.509 kb on + strand, within GFF3310at 136.510 kb on - strand, within GFF3310at 136.510 kb on - strand, within GFF3310at 136.510 kb on - strand, within GFF3310at 136.510 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.531 kb on - strand, within GFF3310at 136.566 kb on + strand, within GFF3310

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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133,839 - GFF3308 0.69 -0.5
133,865 + GFF3308 0.71 +0.8
133,865 + GFF3308 0.71 +1.0
133,865 + GFF3308 0.71 -0.5
133,865 + GFF3308 0.71 -0.2
133,866 - GFF3308 0.71 -0.8
133,866 - GFF3308 0.71 +0.3
133,866 - GFF3308 0.71 +1.3
133,949 + GFF3308 0.77 +2.2
133,949 + GFF3308 0.77 +0.3
134,031 - GFF3308 0.82 -0.5
134,072 + GFF3308 0.85 +0.5
134,073 - GFF3308 0.85 -0.8
134,138 + GFF3308 0.90 -0.6
134,138 + GFF3308 0.90 -0.1
134,138 + GFF3308 0.90 -0.3
134,138 + GFF3308 0.90 +1.1
134,138 + GFF3308 0.90 -0.1
134,139 - GFF3308 0.90 +0.0
134,139 - GFF3308 0.90 +0.1
134,150 + -2.5
134,151 - +1.1
134,151 - -1.4
134,151 - -0.1
134,151 - -0.1
134,253 - -1.9
134,253 - +0.5
134,253 - -0.8
134,269 + -0.1
134,611 + GFF3309 0.25 +0.3
134,612 - GFF3309 0.25 -0.3
134,899 + GFF3309 0.47 +0.9
134,933 + GFF3309 0.50 +0.1
134,933 + GFF3309 0.50 -0.4
134,933 + GFF3309 0.50 -0.2
134,934 - GFF3309 0.50 -0.5
134,934 - GFF3309 0.50 +1.0
135,060 - GFF3309 0.60 -0.4
135,346 + GFF3309 0.82 -0.4
135,346 + GFF3309 0.82 +0.8
135,347 - GFF3309 0.82 -0.1
135,391 + GFF3309 0.85 +0.2
135,391 + GFF3309 0.85 +1.5
135,392 - GFF3309 0.85 +0.6
135,392 - GFF3309 0.85 -0.2
135,460 + -0.6
135,461 - -0.2
135,461 - +2.7
135,461 - -1.6
135,461 - -0.7
135,475 + -0.3
135,475 + -0.0
135,475 + +0.6
135,476 - -2.1
135,476 - +1.7
135,476 - -0.8
135,476 - -0.0
135,476 - +0.1
135,476 - -2.1
135,476 - -0.4
135,476 - +0.7
135,476 - -0.7
135,476 - +0.1
135,476 - +0.0
135,476 - -0.0
135,578 - -0.4
135,578 - -0.7
135,581 + -0.5
135,581 + +0.5
135,581 + +0.2
135,582 - -0.2
135,588 + -1.1
135,589 - -0.4
135,589 - -1.5
135,599 + -1.1
135,599 + -0.0
135,599 + +0.5
135,599 + -2.8
135,600 - -0.3
135,600 - -0.4
135,600 - -0.4
135,600 - -2.5
135,600 - -0.8
135,759 + +0.9
135,759 + +0.4
135,759 + -1.3
135,759 + -0.3
135,759 + +0.3
135,759 + -0.9
135,760 - -2.3
135,795 + -0.3
135,822 + -0.2
135,822 + +1.0
135,823 - +0.3
135,942 + GFF3310 0.14 +0.7
135,942 + GFF3310 0.14 -0.7
135,942 + GFF3310 0.14 -0.4
135,943 - GFF3310 0.14 -1.7
135,943 - GFF3310 0.14 +0.3
135,943 - GFF3310 0.14 +0.0
135,943 - GFF3310 0.14 -0.2
135,963 + GFF3310 0.15 +0.4
135,963 + GFF3310 0.15 +0.7
135,963 + GFF3310 0.15 +0.2
135,964 - GFF3310 0.15 +0.1
135,964 - GFF3310 0.15 -0.1
136,056 + GFF3310 0.19 +0.6
136,056 + GFF3310 0.19 -1.5
136,056 + GFF3310 0.19 +0.6
136,056 + GFF3310 0.19 +0.1
136,056 + GFF3310 0.19 -2.1
136,056 + GFF3310 0.19 -0.6
136,056 + GFF3310 0.19 -0.9
136,057 - GFF3310 0.19 +0.2
136,057 - GFF3310 0.19 -0.2
136,057 - GFF3310 0.19 -0.3
136,057 - GFF3310 0.19 -0.1
136,092 + GFF3310 0.20 -1.0
136,093 - GFF3310 0.21 +0.4
136,093 - GFF3310 0.21 +0.3
136,093 - GFF3310 0.21 -0.2
136,093 - GFF3310 0.21 -1.6
136,099 + GFF3310 0.21 -0.7
136,099 + GFF3310 0.21 +0.5
136,099 + GFF3310 0.21 -0.6
136,099 + GFF3310 0.21 -0.4
136,099 + GFF3310 0.21 +1.3
136,099 + GFF3310 0.21 -0.9
136,099 + GFF3310 0.21 -1.4
136,099 + GFF3310 0.21 -0.8
136,100 - GFF3310 0.21 +0.7
136,100 - GFF3310 0.21 -1.4
136,100 - GFF3310 0.21 +0.4
136,100 - GFF3310 0.21 -0.6
136,100 - GFF3310 0.21 +0.3
136,100 - GFF3310 0.21 -1.1
136,155 + GFF3310 0.23 -0.6
136,155 + GFF3310 0.23 +0.1
136,155 + GFF3310 0.23 -0.1
136,155 + GFF3310 0.23 +1.0
136,155 + GFF3310 0.23 -1.2
136,155 + GFF3310 0.23 -1.7
136,155 + GFF3310 0.23 -0.2
136,155 + GFF3310 0.23 -2.9
136,156 - GFF3310 0.23 -0.8
136,156 - GFF3310 0.23 -0.2
136,156 - GFF3310 0.23 -0.5
136,156 - GFF3310 0.23 -0.6
136,170 + GFF3310 0.24 +0.5
136,170 + GFF3310 0.24 -0.1
136,170 + GFF3310 0.24 +0.5
136,170 + GFF3310 0.24 -0.1
136,170 + GFF3310 0.24 -0.8
136,171 - GFF3310 0.24 -0.1
136,171 - GFF3310 0.24 -0.0
136,171 - GFF3310 0.24 +0.1
136,171 - GFF3310 0.24 +2.7
136,188 + GFF3310 0.24 -0.4
136,189 - GFF3310 0.25 -1.3
136,189 - GFF3310 0.25 -1.3
136,215 + GFF3310 0.26 -2.1
136,215 + GFF3310 0.26 +0.8
136,215 + GFF3310 0.26 -0.1
136,338 + GFF3310 0.31 -2.3
136,338 + GFF3310 0.31 -1.7
136,338 + GFF3310 0.31 -0.6
136,338 + GFF3310 0.31 +0.9
136,338 + GFF3310 0.31 +0.0
136,338 + GFF3310 0.31 -1.3
136,338 + GFF3310 0.31 +0.1
136,339 - GFF3310 0.31 -0.0
136,339 - GFF3310 0.31 -0.2
136,339 - GFF3310 0.31 +0.2
136,342 + GFF3310 0.31 +1.2
136,342 + GFF3310 0.31 -0.1
136,342 + GFF3310 0.31 +0.3
136,342 + GFF3310 0.31 +0.7
136,343 - GFF3310 0.31 -0.4
136,455 + GFF3310 0.36 +1.3
136,456 - GFF3310 0.36 +0.0
136,456 - GFF3310 0.36 -0.4
136,456 - GFF3310 0.36 -0.4
136,456 - GFF3310 0.36 +0.3
136,485 + GFF3310 0.37 -0.7
136,485 + GFF3310 0.37 -0.3
136,485 + GFF3310 0.37 -0.4
136,485 + GFF3310 0.37 +0.6
136,485 + GFF3310 0.37 -0.3
136,485 + GFF3310 0.37 -0.4
136,485 + GFF3310 0.37 -1.1
136,485 + GFF3310 0.37 +1.1
136,485 + GFF3310 0.37 -2.1
136,485 + GFF3310 0.37 +0.2
136,485 + GFF3310 0.37 +1.7
136,485 + GFF3310 0.37 +1.3
136,486 - GFF3310 0.37 -0.1
136,486 - GFF3310 0.37 -0.6
136,486 - GFF3310 0.37 +0.3
136,486 - GFF3310 0.37 -0.8
136,486 - GFF3310 0.37 -1.1
136,486 - GFF3310 0.37 +0.2
136,486 - GFF3310 0.37 -0.7
136,486 - GFF3310 0.37 -0.4
136,486 - GFF3310 0.37 -0.5
136,486 - GFF3310 0.37 +0.7
136,486 - GFF3310 0.37 -0.8
136,509 + GFF3310 0.38 +0.3
136,509 + GFF3310 0.38 +0.4
136,509 + GFF3310 0.38 -0.5
136,509 + GFF3310 0.38 +0.4
136,509 + GFF3310 0.38 +0.7
136,509 + GFF3310 0.38 -0.3
136,509 + GFF3310 0.38 +1.7
136,510 - GFF3310 0.38 +0.2
136,510 - GFF3310 0.38 -0.5
136,510 - GFF3310 0.38 -0.3
136,510 - GFF3310 0.38 -0.4
136,531 - GFF3310 0.39 +1.5
136,531 - GFF3310 0.39 -1.0
136,531 - GFF3310 0.39 +1.5
136,531 - GFF3310 0.39 +0.5
136,531 - GFF3310 0.39 +0.4
136,531 - GFF3310 0.39 -0.7
136,531 - GFF3310 0.39 +0.7
136,531 - GFF3310 0.39 -0.1
136,566 + GFF3310 0.40 +0.1

Or see this region's nucleotide sequence