Strain Fitness in Variovorax sp. SCN45 around GFF3251

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3249 and GFF3250 overlap by 4 nucleotidesGFF3250 and GFF3251 are separated by 296 nucleotidesGFF3251 and GFF3252 are separated by 4 nucleotides GFF3249 - Guanyl-specific ribonuclease (EC 3.1.27.3), at 66,152 to 66,565 GFF3249 GFF3250 - Barstar, ribonuclease (Barnase) inhibitor, at 66,562 to 67,041 GFF3250 GFF3251 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182), at 67,338 to 68,105 GFF3251 GFF3252 - Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8), at 68,110 to 69,507 GFF3252 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 66.356 kb on + strand, within GFF3249at 66.356 kb on + strand, within GFF3249at 66.356 kb on + strand, within GFF3249at 66.357 kb on - strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.375 kb on + strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.376 kb on - strand, within GFF3249at 66.422 kb on + strand, within GFF3249at 66.422 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.431 kb on + strand, within GFF3249at 66.432 kb on - strand, within GFF3249at 66.432 kb on - strand, within GFF3249at 66.521 kb on + strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.522 kb on - strand, within GFF3249at 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.536 kb on + strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.537 kb on - strandat 66.621 kb on + strand, within GFF3250at 66.648 kb on - strand, within GFF3250at 66.648 kb on - strand, within GFF3250at 67.039 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.055 kb on + strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.056 kb on - strandat 67.248 kb on + strandat 67.266 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.296 kb on - strandat 67.296 kb on - strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.373 kb on - strandat 67.440 kb on + strand, within GFF3251at 67.441 kb on - strand, within GFF3251at 67.441 kb on - strand, within GFF3251at 67.441 kb on - strand, within GFF3251at 67.621 kb on + strand, within GFF3251at 67.631 kb on - strand, within GFF3251at 67.631 kb on - strand, within GFF3251at 67.631 kb on - strand, within GFF3251at 67.663 kb on + strand, within GFF3251at 67.663 kb on + strand, within GFF3251at 67.663 kb on + strand, within GFF3251at 67.663 kb on + strand, within GFF3251at 67.663 kb on + strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.664 kb on - strand, within GFF3251at 67.674 kb on - strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.747 kb on + strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.748 kb on - strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.786 kb on + strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 67.787 kb on - strand, within GFF3251at 68.132 kb on + strandat 68.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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66,356 + GFF3249 0.49 -1.3
66,356 + GFF3249 0.49 -0.4
66,356 + GFF3249 0.49 -0.6
66,357 - GFF3249 0.50 -0.2
66,375 + GFF3249 0.54 -0.6
66,375 + GFF3249 0.54 +0.8
66,375 + GFF3249 0.54 -0.6
66,375 + GFF3249 0.54 +0.0
66,375 + GFF3249 0.54 -1.2
66,375 + GFF3249 0.54 -0.3
66,375 + GFF3249 0.54 -0.6
66,375 + GFF3249 0.54 +0.8
66,375 + GFF3249 0.54 +0.9
66,375 + GFF3249 0.54 +0.5
66,375 + GFF3249 0.54 +0.2
66,375 + GFF3249 0.54 -0.5
66,376 - GFF3249 0.54 +1.0
66,376 - GFF3249 0.54 -0.9
66,376 - GFF3249 0.54 -0.3
66,376 - GFF3249 0.54 -1.6
66,376 - GFF3249 0.54 -0.4
66,376 - GFF3249 0.54 +0.0
66,376 - GFF3249 0.54 -0.9
66,376 - GFF3249 0.54 +0.1
66,376 - GFF3249 0.54 +2.0
66,376 - GFF3249 0.54 -0.6
66,376 - GFF3249 0.54 -1.6
66,376 - GFF3249 0.54 +0.1
66,376 - GFF3249 0.54 -0.1
66,376 - GFF3249 0.54 -0.6
66,422 + GFF3249 0.65 -0.6
66,422 + GFF3249 0.65 -1.0
66,431 + GFF3249 0.67 -1.0
66,431 + GFF3249 0.67 -0.1
66,431 + GFF3249 0.67 +0.0
66,431 + GFF3249 0.67 +0.7
66,432 - GFF3249 0.68 -0.8
66,432 - GFF3249 0.68 +0.7
66,521 + GFF3249 0.89 -0.2
66,522 - GFF3249 0.89 +0.7
66,522 - GFF3249 0.89 -2.0
66,522 - GFF3249 0.89 -0.7
66,536 + -0.6
66,536 + -0.2
66,536 + -0.2
66,536 + +0.7
66,536 + -2.1
66,536 + +0.6
66,536 + -1.3
66,536 + -0.6
66,537 - -0.8
66,537 - +0.2
66,537 - -1.1
66,537 - +1.2
66,537 - -0.1
66,537 - +0.5
66,537 - -0.8
66,621 + GFF3250 0.12 -0.2
66,648 - GFF3250 0.18 +0.2
66,648 - GFF3250 0.18 -0.3
67,039 + -1.2
67,055 + +0.7
67,055 + -0.2
67,055 + +1.2
67,055 + -0.6
67,055 + +0.0
67,055 + -0.3
67,055 + -0.6
67,056 - -2.1
67,056 - -0.4
67,056 - -1.3
67,056 - +0.0
67,056 - -0.5
67,056 - +1.5
67,056 - -1.0
67,056 - +0.0
67,056 - -0.4
67,056 - -0.1
67,056 - +0.3
67,056 - +0.3
67,056 - -0.2
67,248 + +0.7
67,266 + +1.0
67,295 + +0.2
67,295 + -0.1
67,295 + +0.5
67,296 - -1.0
67,296 - +0.9
67,372 + -1.4
67,372 + -1.5
67,372 + -0.4
67,372 + +0.3
67,372 + -0.1
67,372 + -1.3
67,373 - -0.2
67,373 - +0.4
67,373 - +0.1
67,373 - +0.0
67,373 - -0.3
67,373 - +0.2
67,373 - -0.6
67,373 - -0.4
67,373 - +0.4
67,373 - -0.1
67,440 + GFF3251 0.13 -2.2
67,441 - GFF3251 0.13 -1.9
67,441 - GFF3251 0.13 -2.4
67,441 - GFF3251 0.13 -2.5
67,621 + GFF3251 0.37 +0.6
67,631 - GFF3251 0.38 -0.0
67,631 - GFF3251 0.38 -0.6
67,631 - GFF3251 0.38 -0.2
67,663 + GFF3251 0.42 -1.6
67,663 + GFF3251 0.42 -1.1
67,663 + GFF3251 0.42 +0.5
67,663 + GFF3251 0.42 -1.7
67,663 + GFF3251 0.42 -0.8
67,664 - GFF3251 0.42 -0.7
67,664 - GFF3251 0.42 -0.5
67,664 - GFF3251 0.42 -1.0
67,664 - GFF3251 0.42 -0.5
67,664 - GFF3251 0.42 -2.7
67,664 - GFF3251 0.42 +0.2
67,664 - GFF3251 0.42 -2.0
67,664 - GFF3251 0.42 -1.2
67,674 - GFF3251 0.44 +0.0
67,747 + GFF3251 0.53 +0.6
67,747 + GFF3251 0.53 -0.3
67,747 + GFF3251 0.53 -0.8
67,747 + GFF3251 0.53 -0.7
67,747 + GFF3251 0.53 -0.1
67,747 + GFF3251 0.53 -1.4
67,747 + GFF3251 0.53 +0.2
67,747 + GFF3251 0.53 -0.7
67,748 - GFF3251 0.53 -0.8
67,748 - GFF3251 0.53 -0.0
67,748 - GFF3251 0.53 +0.6
67,748 - GFF3251 0.53 -1.1
67,748 - GFF3251 0.53 -0.2
67,748 - GFF3251 0.53 -1.1
67,786 + GFF3251 0.58 -0.7
67,786 + GFF3251 0.58 -2.1
67,786 + GFF3251 0.58 -0.5
67,786 + GFF3251 0.58 -0.3
67,786 + GFF3251 0.58 -0.6
67,786 + GFF3251 0.58 -0.1
67,786 + GFF3251 0.58 -0.9
67,786 + GFF3251 0.58 -1.3
67,787 - GFF3251 0.58 -1.6
67,787 - GFF3251 0.58 -0.4
67,787 - GFF3251 0.58 -0.5
67,787 - GFF3251 0.58 +1.2
67,787 - GFF3251 0.58 -1.3
67,787 - GFF3251 0.58 -1.0
68,132 + +0.5
68,132 + +1.1

Or see this region's nucleotide sequence