Strain Fitness in Variovorax sp. SCN45 around GFF3217

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3214 and GFF3215 overlap by 4 nucleotidesGFF3215 and GFF3216 are separated by 188 nucleotidesGFF3216 and GFF3217 are separated by 6 nucleotidesGFF3217 and GFF3218 are separated by 2 nucleotides GFF3214 - FIG138928: iron-regulated membrane protein, at 34,423 to 36,090 GFF3214 GFF3215 - no description, at 36,087 to 36,398 GFF3215 GFF3216 - hypothetical protein, at 36,587 to 37,069 GFF3216 GFF3217 - hypothetical protein, at 37,076 to 37,687 GFF3217 GFF3218 - Phage tail fiber, at 37,690 to 38,703 GFF3218 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1at 36.379 kb on + strandat 36.565 kb on + strandat 36.639 kb on + strand, within GFF3216at 36.639 kb on + strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.640 kb on - strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.702 kb on + strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.703 kb on - strand, within GFF3216at 36.846 kb on - strand, within GFF3216at 37.077 kb on + strandat 37.077 kb on + strandat 37.078 kb on - strandat 37.078 kb on - strandat 37.201 kb on - strand, within GFF3217at 37.284 kb on + strand, within GFF3217at 37.284 kb on + strand, within GFF3217at 37.284 kb on + strand, within GFF3217at 37.285 kb on - strand, within GFF3217at 37.285 kb on - strand, within GFF3217at 37.285 kb on - strand, within GFF3217at 37.318 kb on - strand, within GFF3217at 37.391 kb on + strand, within GFF3217at 37.391 kb on + strand, within GFF3217at 37.391 kb on + strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.392 kb on - strand, within GFF3217at 37.448 kb on + strand, within GFF3217at 37.501 kb on + strand, within GFF3217at 37.501 kb on + strand, within GFF3217at 37.501 kb on + strand, within GFF3217at 37.501 kb on + strand, within GFF3217at 37.501 kb on + strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.502 kb on - strand, within GFF3217at 37.521 kb on + strand, within GFF3217at 37.521 kb on + strand, within GFF3217at 37.641 kb on + strandat 37.642 kb on + strandat 37.642 kb on - strandat 37.642 kb on - strandat 37.642 kb on - strandat 37.642 kb on - strandat 37.642 kb on - strandat 37.665 kb on + strandat 37.666 kb on - strandat 37.694 kb on + strandat 37.695 kb on - strandat 37.712 kb on + strandat 37.712 kb on + strandat 37.713 kb on - strandat 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.809 kb on - strand, within GFF3218at 38.018 kb on + strand, within GFF3218at 38.018 kb on + strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.112 kb on - strand, within GFF3218at 38.125 kb on - strand, within GFF3218at 38.223 kb on - strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.262 kb on + strand, within GFF3218at 38.324 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.568 kb on - strand, within GFF3218at 38.616 kb on - strandat 38.638 kb on + strandat 38.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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36,379 + +0.2
36,565 + +0.0
36,639 + GFF3216 0.11 +0.1
36,639 + GFF3216 0.11 -0.2
36,640 - GFF3216 0.11 +0.7
36,640 - GFF3216 0.11 -0.7
36,640 - GFF3216 0.11 +1.7
36,640 - GFF3216 0.11 -0.3
36,702 + GFF3216 0.24 +0.7
36,702 + GFF3216 0.24 -0.3
36,702 + GFF3216 0.24 +0.4
36,703 - GFF3216 0.24 -0.8
36,703 - GFF3216 0.24 +0.5
36,703 - GFF3216 0.24 -0.1
36,846 - GFF3216 0.54 +0.4
37,077 + -0.2
37,077 + +0.4
37,078 - +0.5
37,078 - -2.3
37,201 - GFF3217 0.20 -1.8
37,284 + GFF3217 0.34 -0.0
37,284 + GFF3217 0.34 -0.5
37,284 + GFF3217 0.34 -0.3
37,285 - GFF3217 0.34 -1.1
37,285 - GFF3217 0.34 -1.0
37,285 - GFF3217 0.34 -2.3
37,318 - GFF3217 0.40 -0.7
37,391 + GFF3217 0.51 +0.3
37,391 + GFF3217 0.51 -0.2
37,391 + GFF3217 0.51 +0.3
37,392 - GFF3217 0.52 +0.3
37,392 - GFF3217 0.52 -1.6
37,392 - GFF3217 0.52 -0.4
37,392 - GFF3217 0.52 -0.1
37,392 - GFF3217 0.52 -0.3
37,392 - GFF3217 0.52 +0.1
37,448 + GFF3217 0.61 -0.1
37,501 + GFF3217 0.69 -0.1
37,501 + GFF3217 0.69 -0.5
37,501 + GFF3217 0.69 -0.1
37,501 + GFF3217 0.69 -0.8
37,501 + GFF3217 0.69 +0.2
37,502 - GFF3217 0.70 -1.3
37,502 - GFF3217 0.70 -1.0
37,502 - GFF3217 0.70 +0.3
37,502 - GFF3217 0.70 -0.2
37,502 - GFF3217 0.70 -0.1
37,502 - GFF3217 0.70 -0.3
37,502 - GFF3217 0.70 -1.1
37,521 + GFF3217 0.73 -0.9
37,521 + GFF3217 0.73 +0.0
37,641 + +0.3
37,642 + -0.3
37,642 - +0.3
37,642 - -0.8
37,642 - +0.3
37,642 - -0.1
37,642 - -0.5
37,665 + -0.5
37,666 - -0.1
37,694 + -1.0
37,695 - -1.8
37,712 + -0.6
37,712 + +0.0
37,713 - +1.7
37,808 + GFF3218 0.12 +0.5
37,808 + GFF3218 0.12 +0.0
37,808 + GFF3218 0.12 -0.8
37,808 + GFF3218 0.12 -1.6
37,809 - GFF3218 0.12 +1.4
38,018 + GFF3218 0.32 -0.7
38,018 + GFF3218 0.32 +0.2
38,019 - GFF3218 0.32 -0.2
38,019 - GFF3218 0.32 -0.5
38,019 - GFF3218 0.32 +0.4
38,111 + GFF3218 0.42 +0.2
38,111 + GFF3218 0.42 -0.4
38,111 + GFF3218 0.42 +0.7
38,112 - GFF3218 0.42 -0.8
38,125 - GFF3218 0.43 +0.0
38,223 - GFF3218 0.53 +0.5
38,255 + GFF3218 0.56 -1.8
38,255 + GFF3218 0.56 -0.8
38,255 + GFF3218 0.56 -0.3
38,256 - GFF3218 0.56 +0.7
38,256 - GFF3218 0.56 +0.5
38,256 - GFF3218 0.56 -0.4
38,262 + GFF3218 0.56 -0.4
38,324 + GFF3218 0.63 -1.4
38,567 + GFF3218 0.86 -0.1
38,567 + GFF3218 0.86 +0.2
38,567 + GFF3218 0.86 +0.1
38,567 + GFF3218 0.86 +0.4
38,568 - GFF3218 0.87 +1.4
38,616 - +0.2
38,638 + -2.3
38,639 - -0.7

Or see this region's nucleotide sequence