Strain Fitness in Variovorax sp. SCN45 around GFF2714

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
146,934	+				+0.2
146,935	-				+0.1
147,366	+				-0.8
147,366	+				-1.1
147,432	+				+0.1
147,432	+				-0.2
147,432	+				-0.0
147,433	-				+0.3
147,433	-				+0.5
147,433	-				-0.2
147,433	-				+0.1
147,433	-				-2.0
147,651	-				-0.9
147,651	-				+0.2
147,747	+				-0.5
147,747	+				+0.1
147,747	+				-0.1
147,747	+				+0.1
147,748	-				-0.1
148,115	+		GFF2714	0.45	-1.1
148,116	-		GFF2714	0.46	-0.7
148,116	-		GFF2714	0.46	-1.1
148,116	-		GFF2714	0.46	-0.9
148,389	-		GFF2714	0.72	-1.0
148,389	-		GFF2714	0.72	+0.3
148,524	-		GFF2714	0.85	-0.9
148,524	-		GFF2714	0.85	-0.6
148,818	+				+0.4
149,262	+		GFF2715	0.47	-0.5
149,262	+		GFF2715	0.47	-0.4
149,262	+		GFF2715	0.47	-0.1
149,263	-		GFF2715	0.47	+0.2
149,544	+		GFF2715	0.76	+0.8
149,544	+		GFF2715	0.76	-0.6
149,544	+		GFF2715	0.76	+0.9
149,545	-		GFF2715	0.76	+1.5