Strain Fitness in Variovorax sp. SCN45 around GFF2602

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
6,647	+				-0.4
6,647	+				+0.2
6,648	-				+0.1
6,648	-				-0.4
6,648	-				-1.2
6,678	-				-1.7
6,759	+				+0.5
6,760	-				-0.2
6,760	-				-0.4
6,760	-				+0.1
6,760	-				-1.0
6,990	+		GFF2601	0.25	-0.7
6,990	+		GFF2601	0.25	+1.1
6,990	+		GFF2601	0.25	-1.0
6,990	+		GFF2601	0.25	+0.7
6,990	+		GFF2601	0.25	+0.9
6,991	-		GFF2601	0.25	-0.1
6,991	-		GFF2601	0.25	+0.8
6,991	-		GFF2601	0.25	+0.9
7,053	+		GFF2601	0.33	+0.0
7,054	-		GFF2601	0.33	-0.5
7,054	-		GFF2601	0.33	+0.1
7,054	-		GFF2601	0.33	+0.0
7,132	-		GFF2601	0.43	-1.2
7,132	-		GFF2601	0.43	-1.8
7,132	-		GFF2601	0.43	-1.3
7,164	+		GFF2601	0.47	-0.8
7,164	+		GFF2601	0.47	+1.2
7,164	+		GFF2601	0.47	-1.3
7,165	-		GFF2601	0.47	-0.8
7,165	-		GFF2601	0.47	-0.1
7,165	-		GFF2601	0.47	+0.5
7,165	-		GFF2601	0.47	-0.0
7,165	-		GFF2601	0.47	-0.3
7,206	+		GFF2601	0.52	-0.5
7,206	+		GFF2601	0.52	+0.0
7,206	+		GFF2601	0.52	-0.3
7,207	-		GFF2601	0.52	-0.9
7,207	-		GFF2601	0.52	-1.2
7,207	-		GFF2601	0.52	+0.4
7,207	-		GFF2601	0.52	+0.5
7,238	-		GFF2601	0.56	+0.8
7,706	+		GFF2602	0.18	-0.5
7,707	-		GFF2602	0.18	-0.2
7,707	-		GFF2602	0.18	-0.8
7,709	+		GFF2602	0.18	+0.1
7,766	+		GFF2602	0.27	-0.7
7,779	+		GFF2602	0.29	+0.6
8,042	+		GFF2602	0.68	-0.2
8,043	-		GFF2602	0.68	+0.7
8,090	+		GFF2602	0.75	-0.8
8,090	+		GFF2602	0.75	-1.0
8,090	+		GFF2602	0.75	-0.7
8,090	+		GFF2602	0.75	+1.5
8,090	+		GFF2602	0.75	-0.9
8,090	+		GFF2602	0.75	-0.7
8,090	+		GFF2602	0.75	-0.5
8,090	+		GFF2602	0.75	-1.3
8,091	-		GFF2602	0.75	-0.3
8,091	-		GFF2602	0.75	+0.1
8,091	-		GFF2602	0.75	-0.2
8,091	-		GFF2602	0.75	-0.8
8,091	-		GFF2602	0.75	+0.2
8,091	-		GFF2602	0.75	-0.7
8,115	+		GFF2602	0.79	-0.3
8,147	+		GFF2602	0.84	+1.2
8,234	+				-0.2
8,234	+				-0.6
8,235	-				-0.6
8,666	+		GFF2603	0.34	-0.1
8,666	+		GFF2603	0.34	+0.8
8,667	-		GFF2603	0.34	-0.5
8,667	-		GFF2603	0.34	+0.1
8,667	-		GFF2603	0.34	-0.1
8,744	+		GFF2603	0.42	+0.2
8,744	+		GFF2603	0.42	+0.2
8,744	+		GFF2603	0.42	+2.1
8,744	+		GFF2603	0.42	-0.2
8,744	+		GFF2603	0.42	+0.5
8,745	-		GFF2603	0.42	+1.5
8,745	-		GFF2603	0.42	-1.1
8,745	-		GFF2603	0.42	+0.8
8,795	+		GFF2603	0.47	+0.7
8,825	+		GFF2603	0.50	+0.7
8,825	+		GFF2603	0.50	+0.3
8,826	-		GFF2603	0.50	+0.1
8,826	-		GFF2603	0.50	-0.3
8,826	-		GFF2603	0.50	-0.2
8,870	+		GFF2603	0.54	-1.1
8,871	-		GFF2603	0.54	+0.2
9,116	+		GFF2603	0.78	-0.1
9,117	-		GFF2603	0.78	-0.7