Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2371 and GFF2372 are separated by 64 nucleotides GFF2372 and GFF2373 are separated by 75 nucleotides
GFF2371 - BUG/TctC family periplasmic protein, at 425,437 to 426,432
GFF2371
GFF2372 - Similar to citrate lyase beta chain, 3, at 426,497 to 427,366
GFF2372
GFF2373 - Transcriptional regulator, LysR family, at 427,442 to 428,368
GFF2373
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.856 kb on - strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.951 kb on + strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 426.146 kb on + strand, within GFF2371 at 426.147 kb on - strand, within GFF2371 at 426.169 kb on + strand, within GFF2371 at 426.462 kb on + strand at 426.462 kb on + strand at 426.462 kb on + strand at 426.462 kb on + strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.463 kb on - strand at 426.591 kb on + strand, within GFF2372 at 426.592 kb on - strand, within GFF2372 at 426.804 kb on + strand, within GFF2372 at 426.810 kb on + strand, within GFF2372 at 426.811 kb on - strand, within GFF2372 at 427.291 kb on + strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.292 kb on - strand at 427.413 kb on + strand at 427.454 kb on + strand at 427.455 kb on - strand at 427.455 kb on - strand at 427.732 kb on + strand, within GFF2373 at 427.732 kb on + strand, within GFF2373 at 427.733 kb on - strand, within GFF2373 at 428.010 kb on - strand, within GFF2373 at 428.049 kb on - strand, within GFF2373 at 428.185 kb on + strand, within GFF2373 at 428.185 kb on + strand, within GFF2373 at 428.186 kb on - strand, within GFF2373 at 428.186 kb on - strand, within GFF2373 at 428.186 kb on - strand, within GFF2373 at 428.326 kb on + strand at 428.326 kb on + strand at 428.326 kb on + strand at 428.326 kb on + strand at 428.327 kb on - strand at 428.327 kb on - strand at 428.327 kb on - strand at 428.327 kb on - strand at 428.364 kb on + strand at 428.364 kb on + strand at 428.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 425,855 + GFF2371 0.42 -0.7 425,855 + GFF2371 0.42 -0.4 425,855 + GFF2371 0.42 +0.5 425,855 + GFF2371 0.42 +0.3 425,856 - GFF2371 0.42 +0.0 425,945 + GFF2371 0.51 -0.6 425,945 + GFF2371 0.51 -1.2 425,945 + GFF2371 0.51 -0.8 425,945 + GFF2371 0.51 -0.4 425,945 + GFF2371 0.51 -0.0 425,945 + GFF2371 0.51 +0.4 425,945 + GFF2371 0.51 +1.0 425,946 - GFF2371 0.51 +1.6 425,946 - GFF2371 0.51 +0.3 425,946 - GFF2371 0.51 -0.3 425,951 + GFF2371 0.52 +0.6 425,952 - GFF2371 0.52 +0.1 425,952 - GFF2371 0.52 -0.1 425,952 - GFF2371 0.52 -0.1 426,146 + GFF2371 0.71 -0.6 426,147 - GFF2371 0.71 -0.5 426,169 + GFF2371 0.73 -0.2 426,462 + -0.4 426,462 + -0.9 426,462 + +0.4 426,462 + -0.3 426,463 - -0.2 426,463 - -0.4 426,463 - +0.2 426,463 - -2.1 426,463 - -0.3 426,463 - +1.6 426,463 - +0.4 426,463 - +0.1 426,463 - +0.0 426,463 - +1.0 426,591 + GFF2372 0.11 -1.4 426,592 - GFF2372 0.11 -2.2 426,804 + GFF2372 0.35 +0.2 426,810 + GFF2372 0.36 -0.8 426,811 - GFF2372 0.36 -2.2 427,291 + -0.4 427,292 - +0.6 427,292 - +0.6 427,292 - -1.5 427,292 - -0.3 427,413 + -2.3 427,454 + -1.3 427,455 - -1.5 427,455 - +0.0 427,732 + GFF2373 0.31 -0.7 427,732 + GFF2373 0.31 -0.8 427,733 - GFF2373 0.31 -0.5 428,010 - GFF2373 0.61 +0.4 428,049 - GFF2373 0.65 -0.1 428,185 + GFF2373 0.80 -0.4 428,185 + GFF2373 0.80 -0.7 428,186 - GFF2373 0.80 +0.9 428,186 - GFF2373 0.80 +0.3 428,186 - GFF2373 0.80 -0.0 428,326 + -1.5 428,326 + -0.7 428,326 + -0.1 428,326 + +0.1 428,327 - -1.5 428,327 - -2.3 428,327 - -0.7 428,327 - +1.3 428,364 + -1.3 428,364 + -0.0 428,366 + +1.0
Or see this region's nucleotide sequence