Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1710 and GFF1711 are separated by 424 nucleotides GFF1711 and GFF1712 are separated by 18 nucleotides GFF1712 and GFF1713 are separated by 88 nucleotides GFF1713 and GFF1714 are separated by 86 nucleotides
GFF1710 - hypothetical protein, at 355,307 to 356,326
GFF1710
GFF1711 - DUF3701 domain / Site-specific tyrosine recombinase, at 356,751 to 358,595
GFF1711
GFF1712 - no description, at 358,614 to 359,102
GFF1712
GFF1713 - no description, at 359,191 to 359,361
GFF1713
GFF1714 - no description, at 359,448 to 359,600
GFF1714
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 356.327 kb on - strand at 356.362 kb on + strand at 356.362 kb on + strand at 356.363 kb on - strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.490 kb on - strand at 356.490 kb on - strand at 356.648 kb on + strand at 356.648 kb on + strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.752 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.980 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.454 kb on + strand, within GFF1711 at 357.454 kb on + strand, within GFF1711 at 357.455 kb on - strand, within GFF1711 at 357.455 kb on - strand, within GFF1711 at 357.455 kb on - strand, within GFF1711 at 357.619 kb on + strand, within GFF1711 at 357.620 kb on - strand, within GFF1711 at 357.710 kb on - strand, within GFF1711 at 357.710 kb on - strand, within GFF1711 at 357.867 kb on + strand, within GFF1711 at 357.867 kb on + strand, within GFF1711 at 357.867 kb on + strand, within GFF1711 at 357.868 kb on - strand, within GFF1711 at 357.881 kb on - strand, within GFF1711 at 357.881 kb on - strand, within GFF1711 at 357.881 kb on - strand, within GFF1711 at 358.013 kb on + strand, within GFF1711 at 358.014 kb on - strand, within GFF1711 at 358.315 kb on + strand, within GFF1711 at 358.315 kb on + strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.547 kb on - strand at 358.547 kb on - strand at 358.547 kb on - strand at 359.005 kb on + strand, within GFF1712 at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.107 kb on - strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.126 kb on + strand at 359.127 kb on - strand at 359.193 kb on - strand at 359.293 kb on - strand, within GFF1713 at 359.293 kb on - strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.390 kb on + strand at 359.391 kb on - strand at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 355,815 + GFF1710 0.50 -1.0 355,815 + GFF1710 0.50 -0.0 355,815 + GFF1710 0.50 +0.1 355,815 + GFF1710 0.50 +0.7 355,815 + GFF1710 0.50 -0.8 355,815 + GFF1710 0.50 -1.0 355,815 + GFF1710 0.50 -0.6 355,815 + GFF1710 0.50 +1.3 355,815 + GFF1710 0.50 +0.1 355,816 - GFF1710 0.50 +0.2 355,816 - GFF1710 0.50 -1.3 355,816 - GFF1710 0.50 -1.2 355,816 - GFF1710 0.50 +0.5 355,816 - GFF1710 0.50 -0.0 355,816 - GFF1710 0.50 -0.4 355,816 - GFF1710 0.50 -0.8 355,816 - GFF1710 0.50 -0.2 355,816 - GFF1710 0.50 -0.3 355,816 - GFF1710 0.50 +0.2 355,816 - GFF1710 0.50 -1.1 355,816 - GFF1710 0.50 -1.3 355,877 + GFF1710 0.56 +0.8 355,877 + GFF1710 0.56 -0.1 355,877 + GFF1710 0.56 -0.9 355,953 + GFF1710 0.63 -0.6 355,953 + GFF1710 0.63 -0.1 355,953 + GFF1710 0.63 -0.1 355,953 + GFF1710 0.63 +1.3 355,954 - GFF1710 0.63 -0.5 355,954 - GFF1710 0.63 -0.5 355,954 - GFF1710 0.63 -0.7 356,327 - -0.3 356,362 + +1.5 356,362 + +0.4 356,363 - -0.0 356,489 + -1.7 356,489 + -0.1 356,489 + -0.4 356,489 + -0.1 356,490 - -0.4 356,490 - -1.3 356,648 + -0.2 356,648 + -1.4 356,649 - -1.3 356,649 - -0.6 356,649 - -0.9 356,649 - -0.3 356,649 - +1.3 356,649 - -2.1 356,649 - +0.9 356,752 + -1.1 356,776 + -0.3 356,776 + -0.8 356,776 + +0.3 356,776 + +0.1 356,777 - +0.2 356,777 - +0.3 356,777 - +0.7 356,777 - -0.0 356,777 - -1.1 356,980 + GFF1711 0.12 -0.3 357,283 + GFF1711 0.29 +0.0 357,283 + GFF1711 0.29 -0.2 357,284 - GFF1711 0.29 -0.1 357,284 - GFF1711 0.29 -0.3 357,284 - GFF1711 0.29 -0.3 357,284 - GFF1711 0.29 -0.0 357,454 + GFF1711 0.38 -1.4 357,454 + GFF1711 0.38 +0.2 357,455 - GFF1711 0.38 -0.7 357,455 - GFF1711 0.38 -0.7 357,455 - GFF1711 0.38 -1.1 357,619 + GFF1711 0.47 +0.1 357,620 - GFF1711 0.47 -0.3 357,710 - GFF1711 0.52 -0.8 357,710 - GFF1711 0.52 -0.4 357,867 + GFF1711 0.60 -0.9 357,867 + GFF1711 0.60 -1.1 357,867 + GFF1711 0.60 -0.0 357,868 - GFF1711 0.61 -1.8 357,881 - GFF1711 0.61 +0.2 357,881 - GFF1711 0.61 +0.7 357,881 - GFF1711 0.61 -0.1 358,013 + GFF1711 0.68 -0.8 358,014 - GFF1711 0.68 -1.1 358,315 + GFF1711 0.85 -0.7 358,315 + GFF1711 0.85 -1.2 358,316 - GFF1711 0.85 +0.2 358,316 - GFF1711 0.85 -0.7 358,316 - GFF1711 0.85 +0.2 358,546 + +0.7 358,546 + -0.3 358,546 + -0.2 358,546 + +0.2 358,546 + -1.8 358,546 + -0.7 358,546 + +1.3 358,547 - +0.7 358,547 - -0.5 358,547 - +0.7 359,005 + GFF1712 0.80 +0.1 359,100 + +0.7 359,100 + -0.1 359,100 + -0.9 359,100 + +0.4 359,100 + -0.2 359,100 + -0.1 359,100 + -0.6 359,101 - -0.7 359,101 - +0.0 359,101 - -1.3 359,101 - -1.3 359,101 - -0.7 359,101 - +0.8 359,101 - -0.3 359,107 - +1.7 359,108 + +0.1 359,108 + -0.6 359,108 + -0.5 359,108 + -0.5 359,108 + +1.1 359,108 + +0.6 359,108 + -0.1 359,108 + +0.5 359,108 + +0.1 359,108 + -0.1 359,108 + +0.3 359,108 + -0.8 359,108 + +0.1 359,109 - +0.1 359,109 - +0.1 359,109 - +0.9 359,109 - -1.5 359,109 - -0.5 359,109 - +0.3 359,109 - +2.0 359,109 - -1.1 359,109 - -0.2 359,109 - +0.9 359,109 - -0.0 359,109 - -0.7 359,109 - -0.3 359,109 - -0.6 359,126 + -0.6 359,127 - -1.9 359,193 - -0.9 359,293 - GFF1713 0.60 -1.1 359,293 - GFF1713 0.60 -0.9 359,299 + GFF1713 0.63 -0.1 359,299 + GFF1713 0.63 -0.2 359,299 + GFF1713 0.63 +1.7 359,299 + GFF1713 0.63 -0.3 359,390 + -0.2 359,391 - -0.2 359,473 + GFF1714 0.16 -0.7 359,473 + GFF1714 0.16 -0.4 359,473 + GFF1714 0.16 +1.5 359,473 + GFF1714 0.16 +0.6 359,473 + GFF1714 0.16 -0.6 359,474 - GFF1714 0.17 +0.1 359,474 - GFF1714 0.17 -0.4 359,474 - GFF1714 0.17 -0.9 359,474 - GFF1714 0.17 +1.7 359,474 - GFF1714 0.17 -0.9
Or see this region's nucleotide sequence