Strain Fitness in Variovorax sp. SCN45 around GFF1432

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
21,772	+				-2.7
21,860	+				-0.8
21,861	-				+0.5
21,861	-				-0.3
21,861	-				+0.3
21,867	-				-0.8
21,867	-				-0.5
22,062	-		GFF1431	0.22	-1.1
22,064	+		GFF1431	0.22	-0.0
22,106	+		GFF1431	0.30	+0.7
22,106	+		GFF1431	0.30	-0.0
22,106	+		GFF1431	0.30	+0.5
22,452	+				+1.4
22,651	+		GFF1432	0.19	-1.2
23,215	+		GFF1432	0.89	-0.4
23,216	-		GFF1432	0.89	-0.4
23,216	-		GFF1432	0.89	+0.2
23,440	-				-0.7
23,547	+		GFF1433	0.13	-0.6
23,548	-		GFF1433	0.13	-0.5
23,548	-		GFF1433	0.13	+0.8
23,548	-		GFF1433	0.13	-0.5
23,548	-		GFF1433	0.13	-0.3
23,796	+		GFF1433	0.31	+0.9
23,797	-		GFF1433	0.31	+0.7
23,797	-		GFF1433	0.31	-0.5
24,160	-		GFF1433	0.57	-0.8
24,213	+		GFF1433	0.61	+1.2
24,214	-		GFF1433	0.61	-0.1
24,214	-		GFF1433	0.61	-0.4
24,216	+		GFF1433	0.61	-0.6