Strain Fitness in Variovorax sp. SCN45 around GFF1326

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1324 and GFF1325 are separated by 5 nucleotidesGFF1325 and GFF1326 are separated by 63 nucleotidesGFF1326 and GFF1327 are separated by 139 nucleotidesGFF1327 and GFF1328 overlap by 4 nucleotidesGFF1328 and GFF1329 are separated by 10 nucleotides GFF1324 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 662,221 to 666,189 GFF1324 GFF1325 - no description, at 666,195 to 666,506 GFF1325 GFF1326 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8), at 666,570 to 667,355 GFF1326 GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 GFF1328 - Intracellular septation protein IspA, at 667,785 to 668,327 GFF1328 GFF1329 - Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12), at 668,338 to 668,754 GFF1329 Position (kb) 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 665.599 kb on + strand, within GFF1324at 665.600 kb on - strand, within GFF1324at 665.999 kb on - strandat 665.999 kb on - strandat 666.346 kb on + strand, within GFF1325at 666.346 kb on + strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.572 kb on - strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.991 kb on + strand, within GFF1326at 666.992 kb on - strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.364 kb on + strandat 667.365 kb on - strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.392 kb on - strandat 667.392 kb on - strandat 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.556 kb on + strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.557 kb on - strand, within GFF1327at 667.767 kb on + strandat 667.768 kb on - strandat 667.773 kb on + strandat 667.774 kb on - strandat 667.774 kb on - strandat 667.812 kb on - strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.828 kb on + strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strandat 667.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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665,599 + GFF1324 0.85 -0.3
665,600 - GFF1324 0.85 -0.3
665,999 - +0.3
665,999 - -1.7
666,346 + GFF1325 0.48 +0.4
666,346 + GFF1325 0.48 -2.1
666,347 - GFF1325 0.49 -0.5
666,347 - GFF1325 0.49 -0.3
666,347 - GFF1325 0.49 +0.2
666,390 + GFF1325 0.62 -1.1
666,390 + GFF1325 0.62 -0.1
666,390 + GFF1325 0.62 +1.9
666,390 + GFF1325 0.62 -0.2
666,390 + GFF1325 0.62 +0.4
666,390 + GFF1325 0.62 +0.5
666,390 + GFF1325 0.62 +0.0
666,390 + GFF1325 0.62 +0.1
666,390 + GFF1325 0.62 +0.6
666,390 + GFF1325 0.62 +0.2
666,390 + GFF1325 0.62 -2.3
666,390 + GFF1325 0.62 +1.3
666,391 - GFF1325 0.63 +0.6
666,391 - GFF1325 0.63 +0.6
666,391 - GFF1325 0.63 -0.4
666,391 - GFF1325 0.63 +0.3
666,391 - GFF1325 0.63 +0.0
666,572 - +0.1
666,607 + +0.1
666,607 + -0.3
666,607 + -1.4
666,607 + -0.3
666,607 + +0.9
666,607 + +1.5
666,955 + GFF1326 0.49 -1.7
666,955 + GFF1326 0.49 -1.5
666,955 + GFF1326 0.49 +1.7
666,955 + GFF1326 0.49 -1.3
666,955 + GFF1326 0.49 -0.8
666,955 + GFF1326 0.49 -0.8
666,955 + GFF1326 0.49 -0.5
666,955 + GFF1326 0.49 -0.8
666,955 + GFF1326 0.49 +1.9
666,955 + GFF1326 0.49 +0.5
666,956 - GFF1326 0.49 +0.5
666,956 - GFF1326 0.49 -1.5
666,956 - GFF1326 0.49 -1.7
666,956 - GFF1326 0.49 -0.3
666,956 - GFF1326 0.49 -0.4
666,956 - GFF1326 0.49 -0.4
666,956 - GFF1326 0.49 +1.3
666,956 - GFF1326 0.49 -1.0
666,991 + GFF1326 0.54 -1.0
666,992 - GFF1326 0.54 +1.3
667,036 + GFF1326 0.59 -0.9
667,036 + GFF1326 0.59 -1.2
667,036 + GFF1326 0.59 -0.4
667,036 + GFF1326 0.59 -0.1
667,036 + GFF1326 0.59 -1.1
667,037 - GFF1326 0.59 +0.3
667,037 - GFF1326 0.59 -0.5
667,037 - GFF1326 0.59 -0.8
667,037 - GFF1326 0.59 +1.3
667,037 - GFF1326 0.59 -0.4
667,037 - GFF1326 0.59 -0.2
667,037 - GFF1326 0.59 +0.7
667,037 - GFF1326 0.59 -0.5
667,037 - GFF1326 0.59 -1.1
667,037 - GFF1326 0.59 -0.2
667,096 + GFF1326 0.67 -0.2
667,096 + GFF1326 0.67 +1.2
667,096 + GFF1326 0.67 -0.1
667,097 - GFF1326 0.67 -0.0
667,097 - GFF1326 0.67 +0.2
667,097 - GFF1326 0.67 -1.3
667,097 - GFF1326 0.67 -0.4
667,364 + -0.5
667,365 - +0.5
667,391 + -0.3
667,391 + +2.7
667,391 + -1.1
667,391 + -0.8
667,391 + +0.0
667,392 - -0.6
667,392 - +0.8
667,556 + GFF1327 0.21 -2.1
667,556 + GFF1327 0.21 -0.3
667,556 + GFF1327 0.21 +0.3
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 +0.8
667,556 + GFF1327 0.21 +1.3
667,556 + GFF1327 0.21 -0.0
667,556 + GFF1327 0.21 +0.1
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 -0.6
667,556 + GFF1327 0.21 -0.3
667,556 + GFF1327 0.21 -0.5
667,556 + GFF1327 0.21 -0.7
667,556 + GFF1327 0.21 -0.1
667,556 + GFF1327 0.21 -2.9
667,556 + GFF1327 0.21 +0.5
667,556 + GFF1327 0.21 -1.1
667,556 + GFF1327 0.21 +0.5
667,557 - GFF1327 0.21 -0.7
667,557 - GFF1327 0.21 -0.1
667,557 - GFF1327 0.21 -0.6
667,557 - GFF1327 0.21 -2.7
667,557 - GFF1327 0.21 -0.5
667,557 - GFF1327 0.21 +0.4
667,557 - GFF1327 0.21 +0.2
667,557 - GFF1327 0.21 +0.1
667,557 - GFF1327 0.21 -0.5
667,557 - GFF1327 0.21 -1.1
667,557 - GFF1327 0.21 -2.8
667,557 - GFF1327 0.21 -0.8
667,557 - GFF1327 0.21 -0.3
667,557 - GFF1327 0.21 -0.2
667,557 - GFF1327 0.21 -0.4
667,767 + +0.5
667,768 - -3.2
667,773 + -0.8
667,774 - -2.5
667,774 - -0.6
667,812 - -1.6
667,828 + -0.1
667,828 + +0.4
667,828 + -0.7
667,828 + -0.5
667,828 + -0.1
667,828 + +0.5
667,828 + -0.5
667,828 + -2.6
667,829 - +1.8
667,829 - +0.6
667,829 - +1.3
667,829 - +0.5
667,829 - -0.8
667,829 - -0.3
667,829 - -0.6
667,829 - +1.5
667,829 - +0.1
667,829 - +0.6
667,829 - -0.1
667,829 - -0.9

Or see this region's nucleotide sequence