Strain Fitness in Variovorax sp. SCN45 around GFF1155

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1153 and GFF1154 overlap by 4 nucleotidesGFF1154 and GFF1155 are separated by 14 nucleotidesGFF1155 and GFF1156 are separated by 16 nucleotidesGFF1156 and GFF1157 overlap by 4 nucleotides GFF1153 - Diacylglycerol kinase (EC 2.7.1.107), at 470,177 to 470,584 GFF1153 GFF1154 - Putative transmembrane protein, at 470,581 to 471,147 GFF1154 GFF1155 - Putative transmembrane protein, at 471,162 to 471,986 GFF1155 GFF1156 - Putative transmembrane protein, at 472,003 to 472,425 GFF1156 GFF1157 - DNA-directed RNA polymerase specialized sigma subunit, sigma24-like, at 472,422 to 472,988 GFF1157 Position (kb) 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1at 470.783 kb on + strand, within GFF1154at 470.840 kb on - strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.872 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.909 kb on - strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.210 kb on + strandat 471.210 kb on + strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.211 kb on - strandat 471.335 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.526 kb on + strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.527 kb on - strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.679 kb on + strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.680 kb on - strand, within GFF1155at 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.956 kb on + strandat 471.957 kb on - strandat 471.957 kb on - strandat 471.957 kb on - strandat 471.957 kb on - strandat 472.053 kb on + strand, within GFF1156at 472.054 kb on - strand, within GFF1156at 472.054 kb on - strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.135 kb on + strand, within GFF1156at 472.136 kb on - strand, within GFF1156at 472.136 kb on - strand, within GFF1156at 472.136 kb on - strand, within GFF1156at 472.416 kb on + strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.417 kb on - strandat 472.419 kb on + strandat 472.419 kb on + strandat 472.419 kb on + strandat 472.419 kb on + strandat 472.419 kb on + strandat 472.420 kb on - strandat 472.420 kb on - strandat 472.420 kb on - strandat 472.420 kb on - strandat 472.420 kb on - strandat 472.420 kb on - strandat 472.425 kb on + strandat 472.425 kb on + strandat 472.425 kb on + strandat 472.431 kb on + strandat 472.431 kb on + strandat 472.553 kb on - strand, within GFF1157at 472.553 kb on - strand, within GFF1157at 472.664 kb on + strand, within GFF1157at 472.665 kb on - strand, within GFF1157at 472.849 kb on + strand, within GFF1157at 472.849 kb on + strand, within GFF1157at 472.849 kb on + strand, within GFF1157at 472.850 kb on - strand, within GFF1157at 472.886 kb on + strand, within GFF1157at 472.918 kb on + strand, within GFF1157at 472.918 kb on + strand, within GFF1157at 472.918 kb on + strand, within GFF1157at 472.918 kb on + strand, within GFF1157at 472.919 kb on - strand, within GFF1157at 472.974 kb on + strandat 472.974 kb on + strandat 472.974 kb on + strandat 472.974 kb on + strandat 472.974 kb on + strandat 472.974 kb on + strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strandat 472.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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470,783 + GFF1154 0.36 -1.1
470,840 - GFF1154 0.46 -0.1
470,841 + GFF1154 0.46 -3.2
470,841 + GFF1154 0.46 -2.0
470,841 + GFF1154 0.46 -0.4
470,842 - GFF1154 0.46 +1.4
470,842 - GFF1154 0.46 +0.5
470,872 + GFF1154 0.51 -2.0
470,894 + GFF1154 0.55 -1.0
470,894 + GFF1154 0.55 -0.3
470,894 + GFF1154 0.55 -0.5
470,894 + GFF1154 0.55 -1.1
470,894 + GFF1154 0.55 -1.6
470,894 + GFF1154 0.55 -2.5
470,894 + GFF1154 0.55 -1.0
470,895 - GFF1154 0.55 -0.6
470,895 - GFF1154 0.55 -0.5
470,895 - GFF1154 0.55 -0.5
470,895 - GFF1154 0.55 -1.1
470,909 - GFF1154 0.58 -1.1
471,026 + GFF1154 0.78 -0.6
471,026 + GFF1154 0.78 -0.6
471,026 + GFF1154 0.78 -1.5
471,026 + GFF1154 0.78 +0.6
471,026 + GFF1154 0.78 -0.2
471,026 + GFF1154 0.78 -1.9
471,026 + GFF1154 0.78 -1.0
471,026 + GFF1154 0.78 -0.4
471,027 - GFF1154 0.79 -1.8
471,027 - GFF1154 0.79 +0.6
471,027 - GFF1154 0.79 -0.7
471,027 - GFF1154 0.79 +0.4
471,027 - GFF1154 0.79 -1.0
471,027 - GFF1154 0.79 +0.7
471,210 + -0.4
471,210 + +1.1
471,211 - -0.7
471,211 - -0.6
471,211 - +0.4
471,211 - +0.2
471,335 + GFF1155 0.21 +0.9
471,526 + GFF1155 0.44 -1.7
471,526 + GFF1155 0.44 -0.0
471,526 + GFF1155 0.44 -1.1
471,527 - GFF1155 0.44 -1.1
471,527 - GFF1155 0.44 -1.2
471,527 - GFF1155 0.44 -1.2
471,527 - GFF1155 0.44 -2.2
471,527 - GFF1155 0.44 -1.1
471,679 + GFF1155 0.63 -1.8
471,679 + GFF1155 0.63 +1.4
471,679 + GFF1155 0.63 -1.3
471,680 - GFF1155 0.63 -1.0
471,680 - GFF1155 0.63 -1.2
471,680 - GFF1155 0.63 -0.2
471,680 - GFF1155 0.63 +0.4
471,956 + -1.5
471,956 + -0.2
471,956 + -0.4
471,956 + -0.8
471,956 + -0.1
471,956 + -0.9
471,956 + -0.2
471,957 - -1.7
471,957 - -0.2
471,957 - -0.1
471,957 - -0.6
472,053 + GFF1156 0.12 -1.6
472,054 - GFF1156 0.12 -0.4
472,054 - GFF1156 0.12 +0.4
472,135 + GFF1156 0.31 +0.5
472,135 + GFF1156 0.31 -0.6
472,135 + GFF1156 0.31 -1.0
472,136 - GFF1156 0.31 +0.4
472,136 - GFF1156 0.31 -1.2
472,136 - GFF1156 0.31 +0.0
472,416 + +0.0
472,417 - -2.2
472,417 - -0.5
472,417 - -1.2
472,417 - +0.3
472,417 - -2.1
472,417 - -0.2
472,417 - +0.0
472,417 - -2.5
472,417 - -2.0
472,417 - -1.5
472,419 + -1.0
472,419 + +0.4
472,419 + -0.1
472,419 + -2.2
472,419 + -0.7
472,420 - +1.0
472,420 - -1.0
472,420 - +0.5
472,420 - -0.3
472,420 - -0.5
472,420 - -1.6
472,425 + -1.1
472,425 + -0.7
472,425 + +0.8
472,431 + +0.5
472,431 + -1.0
472,553 - GFF1157 0.23 -0.5
472,553 - GFF1157 0.23 +0.1
472,664 + GFF1157 0.43 -0.4
472,665 - GFF1157 0.43 +0.0
472,849 + GFF1157 0.75 +0.4
472,849 + GFF1157 0.75 +0.5
472,849 + GFF1157 0.75 +0.5
472,850 - GFF1157 0.75 +0.2
472,886 + GFF1157 0.82 -0.6
472,918 + GFF1157 0.87 -0.4
472,918 + GFF1157 0.87 -0.3
472,918 + GFF1157 0.87 -0.5
472,918 + GFF1157 0.87 +0.0
472,919 - GFF1157 0.88 -0.1
472,974 + -1.6
472,974 + -0.9
472,974 + -0.4
472,974 + -0.2
472,974 + -0.2
472,974 + -0.5
472,975 - -0.6
472,975 - +0.4
472,975 - +0.6
472,975 - -0.2
472,975 - +0.3
472,975 - -0.1
472,975 - -0.6
472,975 - -0.4

Or see this region's nucleotide sequence