Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS08490 and HMPREF1181_RS08495 are separated by 261 nucleotides HMPREF1181_RS08495 and HMPREF1181_RS08500 are separated by 1 nucleotides
HMPREF1181_RS08490: HMPREF1181_RS08490 - heparinase II/III family protein, at 240,908 to 242,872
_RS08490
HMPREF1181_RS08495: HMPREF1181_RS08495 - methylmalonyl-CoA mutase, at 243,134 to 245,281
_RS08495
HMPREF1181_RS08500: HMPREF1181_RS08500 - methylmalonyl-CoA mutase small subunit, at 245,283 to 247,181
_RS08500
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 242.140 kb on + strand, within HMPREF1181_RS08490 at 242.264 kb on + strand, within HMPREF1181_RS08490 at 242.268 kb on - strand, within HMPREF1181_RS08490 at 242.302 kb on - strand, within HMPREF1181_RS08490 at 242.305 kb on + strand, within HMPREF1181_RS08490 at 242.306 kb on - strand, within HMPREF1181_RS08490 at 242.309 kb on + strand, within HMPREF1181_RS08490 at 242.312 kb on - strand, within HMPREF1181_RS08490 at 242.439 kb on - strand, within HMPREF1181_RS08490 at 242.528 kb on + strand, within HMPREF1181_RS08490 at 242.601 kb on + strand, within HMPREF1181_RS08490 at 242.602 kb on - strand, within HMPREF1181_RS08490 at 242.605 kb on - strand, within HMPREF1181_RS08490 at 242.691 kb on - strand at 242.696 kb on - strand at 242.749 kb on - strand at 242.835 kb on + strand at 242.855 kb on - strand at 242.855 kb on - strand at 242.898 kb on + strand at 242.929 kb on - strand at 243.101 kb on + strand at 243.224 kb on - strand at 243.428 kb on - strand, within HMPREF1181_RS08495 at 243.431 kb on + strand, within HMPREF1181_RS08495 at 243.506 kb on - strand, within HMPREF1181_RS08495 at 243.637 kb on + strand, within HMPREF1181_RS08495 at 243.637 kb on + strand, within HMPREF1181_RS08495 at 243.638 kb on - strand, within HMPREF1181_RS08495 at 244.077 kb on + strand, within HMPREF1181_RS08495 at 244.117 kb on - strand, within HMPREF1181_RS08495 at 244.132 kb on + strand, within HMPREF1181_RS08495 at 244.134 kb on + strand, within HMPREF1181_RS08495 at 244.135 kb on - strand, within HMPREF1181_RS08495 at 244.145 kb on - strand, within HMPREF1181_RS08495 at 244.148 kb on - strand, within HMPREF1181_RS08495 at 244.384 kb on + strand, within HMPREF1181_RS08495 at 244.385 kb on - strand, within HMPREF1181_RS08495 at 244.601 kb on - strand, within HMPREF1181_RS08495 at 244.768 kb on - strand, within HMPREF1181_RS08495 at 244.812 kb on - strand, within HMPREF1181_RS08495 at 244.812 kb on - strand, within HMPREF1181_RS08495 at 245.064 kb on + strand, within HMPREF1181_RS08495 at 245.250 kb on + strand at 245.250 kb on + strand at 245.252 kb on + strand at 245.252 kb on + strand at 245.252 kb on + strand at 245.594 kb on - strand, within HMPREF1181_RS08500 at 245.615 kb on + strand, within HMPREF1181_RS08500 at 245.639 kb on + strand, within HMPREF1181_RS08500 at 245.874 kb on - strand, within HMPREF1181_RS08500 at 246.109 kb on + strand, within HMPREF1181_RS08500 at 246.195 kb on + strand, within HMPREF1181_RS08500
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C) remove 242,140 + HMPREF1181_RS08490 0.63 -0.2 242,264 + HMPREF1181_RS08490 0.69 -0.3 242,268 - HMPREF1181_RS08490 0.69 -0.6 242,302 - HMPREF1181_RS08490 0.71 +0.8 242,305 + HMPREF1181_RS08490 0.71 -0.6 242,306 - HMPREF1181_RS08490 0.71 +0.1 242,309 + HMPREF1181_RS08490 0.71 -0.3 242,312 - HMPREF1181_RS08490 0.71 -0.9 242,439 - HMPREF1181_RS08490 0.78 -1.2 242,528 + HMPREF1181_RS08490 0.82 +0.5 242,601 + HMPREF1181_RS08490 0.86 +0.5 242,602 - HMPREF1181_RS08490 0.86 +0.3 242,605 - HMPREF1181_RS08490 0.86 -0.4 242,691 - +0.4 242,696 - +0.2 242,749 - -0.3 242,835 + +0.3 242,855 - -0.1 242,855 - +0.6 242,898 + +0.7 242,929 - +0.3 243,101 + -0.4 243,224 - -0.9 243,428 - HMPREF1181_RS08495 0.14 -2.0 243,431 + HMPREF1181_RS08495 0.14 -1.3 243,506 - HMPREF1181_RS08495 0.17 -0.5 243,637 + HMPREF1181_RS08495 0.23 -1.5 243,637 + HMPREF1181_RS08495 0.23 -1.7 243,638 - HMPREF1181_RS08495 0.23 -3.1 244,077 + HMPREF1181_RS08495 0.44 -1.5 244,117 - HMPREF1181_RS08495 0.46 -0.9 244,132 + HMPREF1181_RS08495 0.46 -2.4 244,134 + HMPREF1181_RS08495 0.47 -1.3 244,135 - HMPREF1181_RS08495 0.47 +0.1 244,145 - HMPREF1181_RS08495 0.47 -0.6 244,148 - HMPREF1181_RS08495 0.47 -1.7 244,384 + HMPREF1181_RS08495 0.58 +0.1 244,385 - HMPREF1181_RS08495 0.58 -1.7 244,601 - HMPREF1181_RS08495 0.68 +1.1 244,768 - HMPREF1181_RS08495 0.76 -0.5 244,812 - HMPREF1181_RS08495 0.78 -1.9 244,812 - HMPREF1181_RS08495 0.78 -1.9 245,064 + HMPREF1181_RS08495 0.90 +0.1 245,250 + -1.7 245,250 + -0.9 245,252 + -1.9 245,252 + -1.7 245,252 + -2.1 245,594 - HMPREF1181_RS08500 0.16 -0.9 245,615 + HMPREF1181_RS08500 0.17 -1.5 245,639 + HMPREF1181_RS08500 0.19 -1.9 245,874 - HMPREF1181_RS08500 0.31 +0.5 246,109 + HMPREF1181_RS08500 0.43 -0.9 246,195 + HMPREF1181_RS08500 0.48 -2.1
Or see this region's nucleotide sequence