Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS01320

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS01315 and HMPREF1181_RS01320 are separated by 226 nucleotidesHMPREF1181_RS01320 and HMPREF1181_RS01325 overlap by 8 nucleotidesHMPREF1181_RS01325 and HMPREF1181_RS01330 are separated by 109 nucleotides HMPREF1181_RS01315: HMPREF1181_RS01315 - hypothetical protein, at 316,918 to 317,769 _RS01315 HMPREF1181_RS01320: HMPREF1181_RS01320 - glycosyltransferase, at 317,996 to 319,261 _RS01320 HMPREF1181_RS01325: HMPREF1181_RS01325 - glycosyltransferase, at 319,254 to 320,000 _RS01325 HMPREF1181_RS01330: HMPREF1181_RS01330 - NAD-dependent deacylase, at 320,110 to 320,808 _RS01330 Position (kb) 317 318 319 320Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 317.033 kb on + strand, within HMPREF1181_RS01315at 317.033 kb on + strand, within HMPREF1181_RS01315at 317.042 kb on + strand, within HMPREF1181_RS01315at 317.052 kb on + strand, within HMPREF1181_RS01315at 317.053 kb on - strand, within HMPREF1181_RS01315at 317.054 kb on + strand, within HMPREF1181_RS01315at 317.117 kb on + strand, within HMPREF1181_RS01315at 317.118 kb on - strand, within HMPREF1181_RS01315at 317.251 kb on + strand, within HMPREF1181_RS01315at 317.251 kb on + strand, within HMPREF1181_RS01315at 317.373 kb on + strand, within HMPREF1181_RS01315at 317.373 kb on + strand, within HMPREF1181_RS01315at 317.511 kb on - strand, within HMPREF1181_RS01315at 317.512 kb on + strand, within HMPREF1181_RS01315at 317.513 kb on - strand, within HMPREF1181_RS01315at 317.585 kb on - strand, within HMPREF1181_RS01315at 317.639 kb on - strand, within HMPREF1181_RS01315at 317.779 kb on + strandat 318.003 kb on + strandat 318.105 kb on + strandat 318.150 kb on - strand, within HMPREF1181_RS01320at 318.195 kb on + strand, within HMPREF1181_RS01320at 318.256 kb on + strand, within HMPREF1181_RS01320at 318.266 kb on - strand, within HMPREF1181_RS01320at 318.315 kb on + strand, within HMPREF1181_RS01320at 318.331 kb on - strand, within HMPREF1181_RS01320at 318.331 kb on - strand, within HMPREF1181_RS01320at 318.343 kb on + strand, within HMPREF1181_RS01320at 318.536 kb on + strand, within HMPREF1181_RS01320at 318.537 kb on - strand, within HMPREF1181_RS01320at 318.562 kb on - strand, within HMPREF1181_RS01320at 318.650 kb on - strand, within HMPREF1181_RS01320at 318.661 kb on + strand, within HMPREF1181_RS01320at 318.770 kb on + strand, within HMPREF1181_RS01320at 318.934 kb on - strand, within HMPREF1181_RS01320at 318.935 kb on + strand, within HMPREF1181_RS01320at 318.935 kb on + strand, within HMPREF1181_RS01320at 318.936 kb on - strand, within HMPREF1181_RS01320at 318.994 kb on + strand, within HMPREF1181_RS01320at 319.079 kb on + strand, within HMPREF1181_RS01320at 319.092 kb on - strand, within HMPREF1181_RS01320at 319.124 kb on + strand, within HMPREF1181_RS01320at 319.136 kb on - strandat 319.223 kb on - strandat 319.300 kb on - strandat 319.368 kb on + strand, within HMPREF1181_RS01325at 319.368 kb on + strand, within HMPREF1181_RS01325at 319.368 kb on + strand, within HMPREF1181_RS01325at 319.368 kb on + strand, within HMPREF1181_RS01325at 319.369 kb on - strand, within HMPREF1181_RS01325at 319.370 kb on + strand, within HMPREF1181_RS01325at 319.370 kb on + strand, within HMPREF1181_RS01325at 319.371 kb on - strand, within HMPREF1181_RS01325at 319.371 kb on - strand, within HMPREF1181_RS01325at 319.398 kb on - strand, within HMPREF1181_RS01325at 319.471 kb on - strand, within HMPREF1181_RS01325at 319.573 kb on + strand, within HMPREF1181_RS01325at 319.573 kb on + strand, within HMPREF1181_RS01325at 319.577 kb on + strand, within HMPREF1181_RS01325at 319.577 kb on + strand, within HMPREF1181_RS01325at 319.611 kb on + strand, within HMPREF1181_RS01325at 319.611 kb on + strand, within HMPREF1181_RS01325at 319.612 kb on - strand, within HMPREF1181_RS01325at 319.652 kb on - strand, within HMPREF1181_RS01325at 319.750 kb on + strand, within HMPREF1181_RS01325at 319.751 kb on - strand, within HMPREF1181_RS01325at 319.751 kb on - strand, within HMPREF1181_RS01325at 319.761 kb on + strand, within HMPREF1181_RS01325at 319.761 kb on + strand, within HMPREF1181_RS01325at 319.761 kb on + strand, within HMPREF1181_RS01325at 319.855 kb on + strand, within HMPREF1181_RS01325at 319.855 kb on + strand, within HMPREF1181_RS01325at 319.855 kb on + strand, within HMPREF1181_RS01325at 319.959 kb on + strandat 320.006 kb on - strandat 320.055 kb on + strandat 320.055 kb on + strandat 320.058 kb on - strandat 320.063 kb on + strandat 320.087 kb on + strandat 320.087 kb on + strandat 320.088 kb on - strandat 320.088 kb on - strandat 320.088 kb on - strandat 320.088 kb on - strandat 320.111 kb on + strandat 320.111 kb on + strandat 320.167 kb on + strandat 320.173 kb on + strandat 320.174 kb on - strandat 320.174 kb on - strandat 320.174 kb on - strandat 320.192 kb on - strand, within HMPREF1181_RS01330at 320.192 kb on - strand, within HMPREF1181_RS01330at 320.212 kb on + strand, within HMPREF1181_RS01330at 320.220 kb on - strand, within HMPREF1181_RS01330at 320.244 kb on - strand, within HMPREF1181_RS01330

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
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317,033 + HMPREF1181_RS01315 0.13 -3.3
317,033 + HMPREF1181_RS01315 0.13 -2.9
317,042 + HMPREF1181_RS01315 0.15 -4.1
317,052 + HMPREF1181_RS01315 0.16 -2.7
317,053 - HMPREF1181_RS01315 0.16 -1.5
317,054 + HMPREF1181_RS01315 0.16 -2.0
317,117 + HMPREF1181_RS01315 0.23 -2.3
317,118 - HMPREF1181_RS01315 0.23 -2.4
317,251 + HMPREF1181_RS01315 0.39 -3.2
317,251 + HMPREF1181_RS01315 0.39 -2.9
317,373 + HMPREF1181_RS01315 0.53 -2.8
317,373 + HMPREF1181_RS01315 0.53 -2.7
317,511 - HMPREF1181_RS01315 0.70 -3.2
317,512 + HMPREF1181_RS01315 0.70 -2.4
317,513 - HMPREF1181_RS01315 0.70 -2.2
317,585 - HMPREF1181_RS01315 0.78 -2.4
317,639 - HMPREF1181_RS01315 0.85 -2.0
317,779 + -3.4
318,003 + -2.5
318,105 + -1.4
318,150 - HMPREF1181_RS01320 0.12 -2.1
318,195 + HMPREF1181_RS01320 0.16 -1.9
318,256 + HMPREF1181_RS01320 0.21 -2.0
318,266 - HMPREF1181_RS01320 0.21 -2.1
318,315 + HMPREF1181_RS01320 0.25 -2.3
318,331 - HMPREF1181_RS01320 0.26 -3.2
318,331 - HMPREF1181_RS01320 0.26 -3.0
318,343 + HMPREF1181_RS01320 0.27 -3.0
318,536 + HMPREF1181_RS01320 0.43 -2.6
318,537 - HMPREF1181_RS01320 0.43 -4.1
318,562 - HMPREF1181_RS01320 0.45 -2.8
318,650 - HMPREF1181_RS01320 0.52 -2.8
318,661 + HMPREF1181_RS01320 0.53 -5.0
318,770 + HMPREF1181_RS01320 0.61 -2.7
318,934 - HMPREF1181_RS01320 0.74 -3.6
318,935 + HMPREF1181_RS01320 0.74 -1.5
318,935 + HMPREF1181_RS01320 0.74 -2.2
318,936 - HMPREF1181_RS01320 0.74 -3.9
318,994 + HMPREF1181_RS01320 0.79 -1.2
319,079 + HMPREF1181_RS01320 0.86 -2.7
319,092 - HMPREF1181_RS01320 0.87 -4.0
319,124 + HMPREF1181_RS01320 0.89 -2.0
319,136 - -2.7
319,223 - -1.6
319,300 - -2.9
319,368 + HMPREF1181_RS01325 0.15 -1.7
319,368 + HMPREF1181_RS01325 0.15 -2.9
319,368 + HMPREF1181_RS01325 0.15 -2.3
319,368 + HMPREF1181_RS01325 0.15 -2.8
319,369 - HMPREF1181_RS01325 0.15 -2.8
319,370 + HMPREF1181_RS01325 0.16 -2.0
319,370 + HMPREF1181_RS01325 0.16 -2.7
319,371 - HMPREF1181_RS01325 0.16 -0.5
319,371 - HMPREF1181_RS01325 0.16 -4.2
319,398 - HMPREF1181_RS01325 0.19 -3.0
319,471 - HMPREF1181_RS01325 0.29 -2.3
319,573 + HMPREF1181_RS01325 0.43 -3.1
319,573 + HMPREF1181_RS01325 0.43 -1.7
319,577 + HMPREF1181_RS01325 0.43 -0.4
319,577 + HMPREF1181_RS01325 0.43 -3.5
319,611 + HMPREF1181_RS01325 0.48 -3.0
319,611 + HMPREF1181_RS01325 0.48 -1.8
319,612 - HMPREF1181_RS01325 0.48 -2.7
319,652 - HMPREF1181_RS01325 0.53 -3.0
319,750 + HMPREF1181_RS01325 0.66 -1.8
319,751 - HMPREF1181_RS01325 0.67 -2.3
319,751 - HMPREF1181_RS01325 0.67 -2.4
319,761 + HMPREF1181_RS01325 0.68 -2.7
319,761 + HMPREF1181_RS01325 0.68 -3.2
319,761 + HMPREF1181_RS01325 0.68 -2.9
319,855 + HMPREF1181_RS01325 0.80 -3.3
319,855 + HMPREF1181_RS01325 0.80 -1.9
319,855 + HMPREF1181_RS01325 0.80 -2.3
319,959 + -3.0
320,006 - -0.5
320,055 + -0.4
320,055 + +0.7
320,058 - -0.3
320,063 + +0.8
320,087 + +0.5
320,087 + -0.3
320,088 - -0.1
320,088 - -0.3
320,088 - +0.4
320,088 - +0.6
320,111 + +0.6
320,111 + +0.2
320,167 + -0.6
320,173 + +0.1
320,174 - -0.2
320,174 - -0.3
320,174 - -0.6
320,192 - HMPREF1181_RS01330 0.12 -0.4
320,192 - HMPREF1181_RS01330 0.12 -0.0
320,212 + HMPREF1181_RS01330 0.15 -0.3
320,220 - HMPREF1181_RS01330 0.16 -0.3
320,244 - HMPREF1181_RS01330 0.19 +0.1

Or see this region's nucleotide sequence