Strain Fitness in Variovorax sp. SCN45 around GFF907

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF905 and GFF906 are separated by 11 nucleotidesGFF906 and GFF907 are separated by 109 nucleotidesGFF907 and GFF908 are separated by 99 nucleotides GFF905 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 216,167 to 216,943 GFF905 GFF906 - Transcriptional regulator, at 216,955 to 217,422 GFF906 GFF907 - Transcriptional regulator, LysR family, at 217,532 to 218,425 GFF907 GFF908 - Putative oxidoreductase, at 218,525 to 219,535 GFF908 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1at 216.551 kb on + strand, within GFF905at 216.551 kb on + strand, within GFF905at 216.552 kb on - strand, within GFF905at 216.568 kb on - strand, within GFF905at 216.587 kb on + strand, within GFF905at 216.587 kb on + strand, within GFF905at 216.588 kb on - strand, within GFF905at 216.588 kb on - strand, within GFF905at 216.588 kb on - strand, within GFF905at 216.618 kb on + strand, within GFF905at 216.690 kb on + strand, within GFF905at 216.690 kb on + strand, within GFF905at 216.782 kb on + strand, within GFF905at 216.783 kb on - strand, within GFF905at 216.783 kb on - strand, within GFF905at 216.783 kb on - strand, within GFF905at 216.783 kb on - strand, within GFF905at 216.811 kb on - strand, within GFF905at 216.811 kb on - strand, within GFF905at 216.965 kb on + strandat 216.966 kb on - strandat 217.229 kb on + strand, within GFF906at 217.229 kb on + strand, within GFF906at 217.229 kb on + strand, within GFF906at 217.230 kb on - strand, within GFF906at 217.230 kb on - strand, within GFF906at 217.230 kb on - strand, within GFF906at 217.434 kb on + strandat 217.434 kb on + strandat 217.434 kb on + strandat 217.434 kb on + strandat 217.435 kb on - strandat 217.435 kb on - strandat 217.436 kb on + strandat 217.437 kb on - strandat 217.437 kb on - strandat 217.437 kb on - strandat 217.458 kb on - strandat 217.599 kb on + strandat 217.599 kb on + strandat 217.599 kb on + strandat 217.815 kb on + strand, within GFF907at 217.815 kb on + strand, within GFF907at 217.816 kb on - strand, within GFF907at 217.816 kb on - strand, within GFF907at 217.816 kb on - strand, within GFF907at 217.816 kb on - strand, within GFF907at 217.816 kb on - strand, within GFF907at 218.068 kb on - strand, within GFF907at 218.068 kb on - strand, within GFF907at 218.531 kb on + strandat 218.532 kb on - strandat 218.532 kb on - strandat 218.681 kb on + strand, within GFF908at 218.681 kb on + strand, within GFF908at 218.681 kb on + strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.682 kb on - strand, within GFF908at 218.864 kb on + strand, within GFF908at 218.864 kb on + strand, within GFF908at 218.879 kb on + strand, within GFF908at 218.879 kb on + strand, within GFF908at 218.879 kb on + strand, within GFF908at 218.880 kb on - strand, within GFF908at 218.880 kb on - strand, within GFF908at 218.880 kb on - strand, within GFF908at 218.880 kb on - strand, within GFF908at 218.880 kb on - strand, within GFF908at 218.880 kb on - strand, within GFF908at 219.062 kb on + strand, within GFF908at 219.062 kb on + strand, within GFF908at 219.062 kb on + strand, within GFF908at 219.173 kb on + strand, within GFF908at 219.173 kb on + strand, within GFF908at 219.401 kb on + strand, within GFF908at 219.401 kb on + strand, within GFF908at 219.401 kb on + strand, within GFF908at 219.401 kb on + strand, within GFF908at 219.402 kb on - strand, within GFF908at 219.402 kb on - strand, within GFF908at 219.402 kb on - strand, within GFF908at 219.402 kb on - strand, within GFF908at 219.402 kb on - strand, within GFF908at 219.402 kb on - strand, within GFF908

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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216,551 + GFF905 0.49 -0.2
216,551 + GFF905 0.49 +1.0
216,552 - GFF905 0.50 -0.6
216,568 - GFF905 0.52 -0.6
216,587 + GFF905 0.54 +0.1
216,587 + GFF905 0.54 -0.4
216,588 - GFF905 0.54 -0.4
216,588 - GFF905 0.54 +0.2
216,588 - GFF905 0.54 -0.2
216,618 + GFF905 0.58 +0.8
216,690 + GFF905 0.67 -0.2
216,690 + GFF905 0.67 -0.0
216,782 + GFF905 0.79 -0.6
216,783 - GFF905 0.79 -1.6
216,783 - GFF905 0.79 +0.2
216,783 - GFF905 0.79 -1.0
216,783 - GFF905 0.79 +0.8
216,811 - GFF905 0.83 +0.2
216,811 - GFF905 0.83 -3.1
216,965 + +1.2
216,966 - -0.2
217,229 + GFF906 0.59 +0.4
217,229 + GFF906 0.59 -0.1
217,229 + GFF906 0.59 -0.6
217,230 - GFF906 0.59 +0.1
217,230 - GFF906 0.59 -0.9
217,230 - GFF906 0.59 -2.3
217,434 + +0.8
217,434 + -0.2
217,434 + -0.2
217,434 + -0.2
217,435 - -0.2
217,435 - -0.2
217,436 + -1.4
217,437 - -0.0
217,437 - -1.9
217,437 - +0.5
217,458 - -0.4
217,599 + +0.1
217,599 + -1.2
217,599 + +0.2
217,815 + GFF907 0.32 -1.3
217,815 + GFF907 0.32 -0.8
217,816 - GFF907 0.32 -0.7
217,816 - GFF907 0.32 -0.1
217,816 - GFF907 0.32 -0.5
217,816 - GFF907 0.32 -0.6
217,816 - GFF907 0.32 -0.2
218,068 - GFF907 0.60 -1.2
218,068 - GFF907 0.60 -0.3
218,531 + +0.1
218,532 - +0.4
218,532 - +1.1
218,681 + GFF908 0.15 +0.7
218,681 + GFF908 0.15 -0.5
218,681 + GFF908 0.15 -0.9
218,682 - GFF908 0.16 -0.6
218,682 - GFF908 0.16 -0.2
218,682 - GFF908 0.16 -1.4
218,682 - GFF908 0.16 +0.0
218,682 - GFF908 0.16 -1.9
218,682 - GFF908 0.16 -0.7
218,864 + GFF908 0.34 +1.5
218,864 + GFF908 0.34 -0.2
218,879 + GFF908 0.35 -1.1
218,879 + GFF908 0.35 -0.3
218,879 + GFF908 0.35 -0.7
218,880 - GFF908 0.35 +0.3
218,880 - GFF908 0.35 -0.2
218,880 - GFF908 0.35 +0.1
218,880 - GFF908 0.35 -0.1
218,880 - GFF908 0.35 -0.5
218,880 - GFF908 0.35 +0.0
219,062 + GFF908 0.53 +0.2
219,062 + GFF908 0.53 +0.7
219,062 + GFF908 0.53 -0.4
219,173 + GFF908 0.64 -0.5
219,173 + GFF908 0.64 +0.7
219,401 + GFF908 0.87 +1.0
219,401 + GFF908 0.87 -2.3
219,401 + GFF908 0.87 +0.5
219,401 + GFF908 0.87 -0.7
219,402 - GFF908 0.87 -0.4
219,402 - GFF908 0.87 -1.3
219,402 - GFF908 0.87 +1.2
219,402 - GFF908 0.87 -0.2
219,402 - GFF908 0.87 -0.7
219,402 - GFF908 0.87 +0.1

Or see this region's nucleotide sequence