Strain Fitness in Variovorax sp. SCN45 around GFF7375

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7374 and GFF7375 are separated by 4 nucleotidesGFF7375 and GFF7376 are separated by 16 nucleotides GFF7374 - FIG00984748: hypothetical protein, at 3,667 to 4,743 GFF7374 GFF7375 - Arginine:pyruvate transaminase, at 4,748 to 5,956 GFF7375 GFF7376 - Transcriptional regulator, LysR family, at 5,973 to 6,884 GFF7376 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1at 4.009 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.607 kb on - strand, within GFF7374at 4.615 kb on + strand, within GFF7374at 4.616 kb on - strand, within GFF7374at 4.830 kb on + strandat 4.831 kb on - strandat 4.831 kb on - strandat 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.277 kb on + strand, within GFF7375at 5.371 kb on - strand, within GFF7375at 5.415 kb on - strand, within GFF7375at 5.437 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.391 kb on + strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.862 kb on + strandat 6.862 kb on + strandat 6.862 kb on + strandat 6.863 kb on - strandat 6.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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4,009 + GFF7374 0.32 +0.4
4,111 + GFF7374 0.41 -0.3
4,111 + GFF7374 0.41 +0.3
4,111 + GFF7374 0.41 -0.6
4,111 + GFF7374 0.41 -1.4
4,111 + GFF7374 0.41 -1.0
4,112 - GFF7374 0.41 +0.3
4,112 - GFF7374 0.41 -1.7
4,112 - GFF7374 0.41 -1.4
4,114 + GFF7374 0.42 +1.4
4,114 + GFF7374 0.42 -0.7
4,114 + GFF7374 0.42 +0.8
4,114 + GFF7374 0.42 +1.6
4,114 + GFF7374 0.42 +0.4
4,115 - GFF7374 0.42 -1.0
4,115 - GFF7374 0.42 -0.6
4,115 - GFF7374 0.42 -0.0
4,115 - GFF7374 0.42 +0.9
4,231 + GFF7374 0.52 +0.2
4,231 + GFF7374 0.52 -0.3
4,231 + GFF7374 0.52 -0.2
4,345 + GFF7374 0.63 -0.5
4,345 + GFF7374 0.63 +0.2
4,345 + GFF7374 0.63 -0.9
4,346 - GFF7374 0.63 +1.6
4,346 - GFF7374 0.63 +0.9
4,346 - GFF7374 0.63 +0.9
4,346 - GFF7374 0.63 +1.6
4,582 + GFF7374 0.85 +0.3
4,582 + GFF7374 0.85 +0.4
4,582 + GFF7374 0.85 -1.3
4,582 + GFF7374 0.85 -1.8
4,583 - GFF7374 0.85 -0.2
4,583 - GFF7374 0.85 -0.3
4,583 - GFF7374 0.85 +0.4
4,583 - GFF7374 0.85 -0.4
4,583 - GFF7374 0.85 -0.8
4,583 - GFF7374 0.85 -0.8
4,583 - GFF7374 0.85 +0.3
4,583 - GFF7374 0.85 +0.1
4,607 - GFF7374 0.87 -0.6
4,615 + GFF7374 0.88 -0.5
4,616 - GFF7374 0.88 -1.0
4,830 + +1.1
4,831 - +0.8
4,831 - -1.8
5,034 + GFF7375 0.24 -1.2
5,034 + GFF7375 0.24 +0.5
5,034 + GFF7375 0.24 +0.2
5,034 + GFF7375 0.24 +0.2
5,035 - GFF7375 0.24 +0.6
5,035 - GFF7375 0.24 +0.3
5,035 - GFF7375 0.24 +1.0
5,035 - GFF7375 0.24 -0.8
5,035 - GFF7375 0.24 -1.6
5,035 - GFF7375 0.24 -0.4
5,145 + GFF7375 0.33 -0.1
5,145 + GFF7375 0.33 -0.1
5,145 + GFF7375 0.33 +0.8
5,145 + GFF7375 0.33 +1.0
5,145 + GFF7375 0.33 -0.3
5,145 + GFF7375 0.33 -1.6
5,145 + GFF7375 0.33 -0.8
5,146 - GFF7375 0.33 +0.8
5,146 - GFF7375 0.33 +0.6
5,146 - GFF7375 0.33 -0.0
5,146 - GFF7375 0.33 +0.1
5,146 - GFF7375 0.33 -1.6
5,146 - GFF7375 0.33 -1.0
5,146 - GFF7375 0.33 -1.4
5,146 - GFF7375 0.33 -0.5
5,146 - GFF7375 0.33 +0.0
5,146 - GFF7375 0.33 +0.1
5,146 - GFF7375 0.33 +0.6
5,146 - GFF7375 0.33 -0.7
5,146 - GFF7375 0.33 +0.9
5,146 - GFF7375 0.33 +0.4
5,146 - GFF7375 0.33 +0.7
5,277 + GFF7375 0.44 +0.2
5,371 - GFF7375 0.52 +1.5
5,415 - GFF7375 0.55 -0.2
5,437 + GFF7375 0.57 -0.4
5,493 + GFF7375 0.62 +0.9
5,493 + GFF7375 0.62 -0.4
5,493 + GFF7375 0.62 +1.0
5,493 + GFF7375 0.62 -0.0
5,493 + GFF7375 0.62 -1.5
5,493 + GFF7375 0.62 +1.3
5,494 - GFF7375 0.62 -0.4
5,494 - GFF7375 0.62 -2.1
5,494 - GFF7375 0.62 -0.0
5,494 - GFF7375 0.62 +0.8
5,494 - GFF7375 0.62 +1.1
5,541 + GFF7375 0.66 +0.2
5,541 + GFF7375 0.66 -0.4
5,542 - GFF7375 0.66 +1.1
5,542 - GFF7375 0.66 -0.5
5,542 - GFF7375 0.66 +0.3
5,542 - GFF7375 0.66 -0.9
5,653 - GFF7375 0.75 -0.2
5,653 - GFF7375 0.75 -1.7
5,727 + GFF7375 0.81 -0.1
5,727 + GFF7375 0.81 +0.2
5,727 + GFF7375 0.81 +0.1
5,727 + GFF7375 0.81 -0.5
5,728 - GFF7375 0.81 -0.4
5,728 - GFF7375 0.81 -0.1
5,728 - GFF7375 0.81 -1.0
5,728 - GFF7375 0.81 +0.8
5,728 - GFF7375 0.81 +0.8
5,728 - GFF7375 0.81 +0.0
6,277 + GFF7376 0.33 -0.0
6,277 + GFF7376 0.33 -0.6
6,277 + GFF7376 0.33 -0.1
6,313 + GFF7376 0.37 -0.4
6,313 + GFF7376 0.37 +0.5
6,313 + GFF7376 0.37 -0.7
6,313 + GFF7376 0.37 -2.4
6,313 + GFF7376 0.37 +1.6
6,313 + GFF7376 0.37 +0.9
6,313 + GFF7376 0.37 +1.1
6,313 + GFF7376 0.37 -0.3
6,314 - GFF7376 0.37 +0.0
6,314 - GFF7376 0.37 +0.1
6,314 - GFF7376 0.37 -0.4
6,314 - GFF7376 0.37 +0.5
6,314 - GFF7376 0.37 -1.3
6,314 - GFF7376 0.37 -2.0
6,314 - GFF7376 0.37 +0.6
6,376 + GFF7376 0.44 -0.3
6,376 + GFF7376 0.44 +0.8
6,376 + GFF7376 0.44 -1.1
6,376 + GFF7376 0.44 -0.7
6,376 + GFF7376 0.44 +0.2
6,376 + GFF7376 0.44 +0.6
6,376 + GFF7376 0.44 -0.7
6,376 + GFF7376 0.44 -1.4
6,376 + GFF7376 0.44 -3.4
6,376 + GFF7376 0.44 +0.2
6,377 - GFF7376 0.44 -1.4
6,377 - GFF7376 0.44 +0.1
6,377 - GFF7376 0.44 -0.8
6,377 - GFF7376 0.44 -1.3
6,377 - GFF7376 0.44 -0.2
6,377 - GFF7376 0.44 -0.3
6,377 - GFF7376 0.44 -0.2
6,391 + GFF7376 0.46 -0.3
6,392 - GFF7376 0.46 +0.5
6,392 - GFF7376 0.46 -0.6
6,392 - GFF7376 0.46 -0.6
6,406 + GFF7376 0.47 -1.3
6,406 + GFF7376 0.47 +0.8
6,407 - GFF7376 0.48 -0.4
6,407 - GFF7376 0.48 -0.4
6,862 + -0.9
6,862 + -0.7
6,862 + -1.3
6,863 - -0.5
6,939 - +0.4

Or see this region's nucleotide sequence