Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7291 and GFF7292 are separated by 227 nucleotides GFF7292 and GFF7293 are separated by 332 nucleotides GFF7293 and GFF7294 are separated by 189 nucleotides
GFF7291 - Magnesium and cobalt transport protein CorA, at 9,446 to 10,432
GFF7291
GFF7292 - ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog, at 10,660 to 12,789
GFF7292
GFF7293 - Ribosome hibernation promoting factor Hpf, at 13,122 to 13,451
GFF7293
GFF7294 - PTS IIA-like nitrogen-regulatory protein PtsN, at 13,641 to 14,108
GFF7294
Position (kb) 10
11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 9.948 kb on + strand, within GFF7291 at 9.948 kb on + strand, within GFF7291 at 9.948 kb on + strand, within GFF7291 at 9.948 kb on + strand, within GFF7291 at 9.949 kb on - strand, within GFF7291 at 10.290 kb on + strand, within GFF7291 at 10.290 kb on + strand, within GFF7291 at 10.291 kb on - strand, within GFF7291 at 10.291 kb on - strand, within GFF7291 at 10.291 kb on - strand, within GFF7291 at 10.293 kb on + strand, within GFF7291 at 10.293 kb on + strand, within GFF7291 at 10.293 kb on + strand, within GFF7291 at 10.293 kb on + strand, within GFF7291 at 10.294 kb on - strand, within GFF7291 at 10.294 kb on - strand, within GFF7291 at 10.294 kb on - strand, within GFF7291 at 10.417 kb on + strand at 10.418 kb on - strand at 10.418 kb on - strand at 10.596 kb on + strand at 10.596 kb on + strand at 10.596 kb on + strand at 10.596 kb on + strand at 10.597 kb on - strand at 10.597 kb on - strand at 10.642 kb on + strand at 10.642 kb on + strand at 10.642 kb on + strand at 10.642 kb on + strand at 10.643 kb on - strand at 10.647 kb on + strand at 10.648 kb on - strand at 11.068 kb on + strand, within GFF7292 at 11.069 kb on - strand, within GFF7292 at 11.318 kb on - strand, within GFF7292 at 11.318 kb on - strand, within GFF7292 at 11.371 kb on + strand, within GFF7292 at 11.371 kb on + strand, within GFF7292 at 11.372 kb on - strand, within GFF7292 at 11.449 kb on + strand, within GFF7292 at 11.449 kb on + strand, within GFF7292 at 11.450 kb on - strand, within GFF7292 at 11.450 kb on - strand, within GFF7292 at 11.545 kb on + strand, within GFF7292 at 11.545 kb on + strand, within GFF7292 at 11.545 kb on + strand, within GFF7292 at 11.546 kb on + strand, within GFF7292 at 11.635 kb on + strand, within GFF7292 at 11.635 kb on + strand, within GFF7292 at 11.636 kb on - strand, within GFF7292 at 11.636 kb on - strand, within GFF7292 at 11.853 kb on + strand, within GFF7292 at 11.853 kb on + strand, within GFF7292 at 11.854 kb on - strand, within GFF7292 at 12.163 kb on + strand, within GFF7292 at 12.163 kb on + strand, within GFF7292 at 12.163 kb on + strand, within GFF7292 at 12.163 kb on + strand, within GFF7292 at 12.163 kb on + strand, within GFF7292 at 12.226 kb on + strand, within GFF7292 at 12.227 kb on - strand, within GFF7292 at 12.250 kb on + strand, within GFF7292 at 12.250 kb on + strand, within GFF7292 at 12.251 kb on - strand, within GFF7292 at 12.251 kb on - strand, within GFF7292 at 12.251 kb on - strand, within GFF7292 at 12.251 kb on - strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.406 kb on + strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.407 kb on - strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.544 kb on + strand, within GFF7292 at 12.545 kb on - strand, within GFF7292 at 12.545 kb on - strand, within GFF7292 at 12.545 kb on - strand, within GFF7292 at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.601 kb on + strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.602 kb on - strand at 12.640 kb on + strand at 12.640 kb on + strand at 12.640 kb on + strand at 12.640 kb on + strand at 12.641 kb on - strand at 12.641 kb on - strand at 12.732 kb on - strand at 12.891 kb on + strand at 12.891 kb on + strand at 12.891 kb on + strand at 12.892 kb on - strand at 12.953 kb on + strand at 12.954 kb on - strand at 12.954 kb on - strand at 12.954 kb on - strand at 12.954 kb on - strand at 12.954 kb on - strand at 12.961 kb on + strand at 12.962 kb on - strand at 12.962 kb on - strand at 12.962 kb on - strand at 12.980 kb on + strand at 12.980 kb on + strand at 12.980 kb on + strand at 12.980 kb on + strand at 12.981 kb on - strand at 12.981 kb on - strand at 12.981 kb on - strand at 12.981 kb on - strand at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.176 kb on + strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.177 kb on - strand, within GFF7293 at 13.222 kb on + strand, within GFF7293 at 13.222 kb on + strand, within GFF7293 at 13.222 kb on + strand, within GFF7293 at 13.223 kb on - strand, within GFF7293 at 13.223 kb on - strand, within GFF7293 at 13.223 kb on - strand, within GFF7293 at 13.223 kb on - strand, within GFF7293 at 13.347 kb on + strand, within GFF7293 at 13.347 kb on + strand, within GFF7293 at 13.348 kb on - strand, within GFF7293 at 13.348 kb on - strand, within GFF7293 at 13.348 kb on - strand, within GFF7293 at 13.348 kb on - strand, within GFF7293 at 13.510 kb on + strand at 13.510 kb on + strand at 13.519 kb on - strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.567 kb on + strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.568 kb on - strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.578 kb on + strand at 13.579 kb on - strand at 13.579 kb on - strand at 13.579 kb on - strand at 13.579 kb on - strand at 13.579 kb on - strand at 13.582 kb on + strand at 13.582 kb on + strand at 13.583 kb on - strand at 13.583 kb on - strand at 13.601 kb on + strand at 13.616 kb on + strand at 13.616 kb on + strand at 13.617 kb on - strand at 13.617 kb on - strand at 13.697 kb on + strand, within GFF7294 at 13.697 kb on + strand, within GFF7294 at 13.697 kb on + strand, within GFF7294 at 13.698 kb on - strand, within GFF7294 at 13.698 kb on - strand, within GFF7294 at 13.698 kb on - strand, within GFF7294 at 13.700 kb on + strand, within GFF7294 at 13.700 kb on + strand, within GFF7294 at 13.700 kb on + strand, within GFF7294 at 13.700 kb on + strand, within GFF7294 at 13.700 kb on + strand, within GFF7294 at 13.701 kb on - strand, within GFF7294 at 13.701 kb on - strand, within GFF7294 at 13.701 kb on - strand, within GFF7294
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 9,948 + GFF7291 0.51 -0.4 9,948 + GFF7291 0.51 -0.6 9,948 + GFF7291 0.51 +1.2 9,948 + GFF7291 0.51 -0.1 9,949 - GFF7291 0.51 -0.6 10,290 + GFF7291 0.86 -0.1 10,290 + GFF7291 0.86 +0.4 10,291 - GFF7291 0.86 +0.1 10,291 - GFF7291 0.86 -2.1 10,291 - GFF7291 0.86 +0.4 10,293 + GFF7291 0.86 -1.3 10,293 + GFF7291 0.86 +0.2 10,293 + GFF7291 0.86 -1.7 10,293 + GFF7291 0.86 +0.8 10,294 - GFF7291 0.86 +0.2 10,294 - GFF7291 0.86 -0.4 10,294 - GFF7291 0.86 +0.0 10,417 + -0.3 10,418 - +0.5 10,418 - -0.3 10,596 + -1.0 10,596 + +0.4 10,596 + +0.4 10,596 + -0.4 10,597 - -0.3 10,597 - -2.0 10,642 + +0.4 10,642 + +0.4 10,642 + -0.4 10,642 + -0.4 10,643 - -0.1 10,647 + +0.8 10,648 - -2.4 11,068 + GFF7292 0.19 +0.5 11,069 - GFF7292 0.19 +1.2 11,318 - GFF7292 0.31 -0.3 11,318 - GFF7292 0.31 +0.5 11,371 + GFF7292 0.33 +0.1 11,371 + GFF7292 0.33 +0.4 11,372 - GFF7292 0.33 -0.1 11,449 + GFF7292 0.37 +0.2 11,449 + GFF7292 0.37 -0.5 11,450 - GFF7292 0.37 -1.0 11,450 - GFF7292 0.37 -1.3 11,545 + GFF7292 0.42 -0.3 11,545 + GFF7292 0.42 -0.5 11,545 + GFF7292 0.42 -0.5 11,546 + GFF7292 0.42 -0.9 11,635 + GFF7292 0.46 +0.4 11,635 + GFF7292 0.46 -0.1 11,636 - GFF7292 0.46 -0.9 11,636 - GFF7292 0.46 -0.6 11,853 + GFF7292 0.56 +0.3 11,853 + GFF7292 0.56 +0.2 11,854 - GFF7292 0.56 -0.9 12,163 + GFF7292 0.71 -1.0 12,163 + GFF7292 0.71 -0.2 12,163 + GFF7292 0.71 +0.8 12,163 + GFF7292 0.71 -0.2 12,163 + GFF7292 0.71 +0.4 12,226 + GFF7292 0.74 -0.7 12,227 - GFF7292 0.74 -0.3 12,250 + GFF7292 0.75 -0.7 12,250 + GFF7292 0.75 -0.4 12,251 - GFF7292 0.75 -0.3 12,251 - GFF7292 0.75 -1.6 12,251 - GFF7292 0.75 -0.1 12,251 - GFF7292 0.75 +0.2 12,406 + GFF7292 0.82 -0.7 12,406 + GFF7292 0.82 -0.4 12,406 + GFF7292 0.82 -0.1 12,406 + GFF7292 0.82 +0.7 12,406 + GFF7292 0.82 -0.9 12,406 + GFF7292 0.82 +0.1 12,407 - GFF7292 0.82 -0.1 12,407 - GFF7292 0.82 -0.9 12,407 - GFF7292 0.82 +1.4 12,407 - GFF7292 0.82 -0.1 12,407 - GFF7292 0.82 +0.5 12,407 - GFF7292 0.82 -1.8 12,544 + GFF7292 0.88 +0.4 12,544 + GFF7292 0.88 -0.7 12,544 + GFF7292 0.88 -0.9 12,544 + GFF7292 0.88 -1.3 12,544 + GFF7292 0.88 -1.9 12,544 + GFF7292 0.88 -1.0 12,545 - GFF7292 0.88 -0.2 12,545 - GFF7292 0.88 -0.6 12,545 - GFF7292 0.88 +0.8 12,601 + -0.6 12,601 + -0.5 12,601 + -0.3 12,601 + -1.0 12,601 + -1.8 12,601 + -0.6 12,601 + +1.2 12,601 + +0.4 12,601 + -1.9 12,601 + -0.1 12,601 + -0.3 12,601 + -0.8 12,601 + -0.3 12,601 + -0.9 12,602 - +0.0 12,602 - -0.4 12,602 - -0.0 12,602 - -0.6 12,602 - -0.1 12,602 - +0.3 12,602 - +1.3 12,602 - -0.2 12,602 - +0.9 12,602 - +0.0 12,602 - +0.3 12,640 + -1.7 12,640 + -0.3 12,640 + -2.0 12,640 + -0.7 12,641 - +0.1 12,641 - +0.1 12,732 - +0.0 12,891 + +0.2 12,891 + -0.4 12,891 + -0.9 12,892 - +0.5 12,953 + -0.2 12,954 - -1.7 12,954 - -0.0 12,954 - -0.8 12,954 - -1.6 12,954 - -0.2 12,961 + +0.4 12,962 - -0.7 12,962 - -0.4 12,962 - -2.1 12,980 + -0.5 12,980 + +0.8 12,980 + -0.3 12,980 + -0.2 12,981 - +0.8 12,981 - -0.0 12,981 - +0.4 12,981 - +1.0 13,176 + GFF7293 0.16 +0.7 13,176 + GFF7293 0.16 +0.5 13,176 + GFF7293 0.16 -0.9 13,176 + GFF7293 0.16 -0.7 13,176 + GFF7293 0.16 -0.4 13,176 + GFF7293 0.16 +0.7 13,176 + GFF7293 0.16 -0.2 13,176 + GFF7293 0.16 -0.8 13,176 + GFF7293 0.16 -0.3 13,177 - GFF7293 0.17 -0.4 13,177 - GFF7293 0.17 +0.1 13,177 - GFF7293 0.17 +0.3 13,177 - GFF7293 0.17 -0.0 13,177 - GFF7293 0.17 +1.4 13,177 - GFF7293 0.17 +0.4 13,177 - GFF7293 0.17 -0.4 13,177 - GFF7293 0.17 -1.1 13,177 - GFF7293 0.17 +1.6 13,222 + GFF7293 0.30 -0.5 13,222 + GFF7293 0.30 -0.9 13,222 + GFF7293 0.30 -0.6 13,223 - GFF7293 0.31 -0.8 13,223 - GFF7293 0.31 +0.4 13,223 - GFF7293 0.31 +1.7 13,223 - GFF7293 0.31 -0.2 13,347 + GFF7293 0.68 -0.7 13,347 + GFF7293 0.68 +0.2 13,348 - GFF7293 0.68 -2.3 13,348 - GFF7293 0.68 -0.5 13,348 - GFF7293 0.68 +0.7 13,348 - GFF7293 0.68 +0.5 13,510 + -0.2 13,510 + -0.3 13,519 - +0.4 13,567 + -1.4 13,567 + -0.1 13,567 + +0.3 13,567 + -1.6 13,567 + +0.1 13,567 + -0.5 13,567 + -0.4 13,567 + -1.3 13,567 + -0.2 13,567 + -0.3 13,567 + -0.6 13,568 - -0.3 13,568 - +0.1 13,568 - -1.2 13,568 - +0.0 13,568 - +0.2 13,568 - -0.4 13,568 - -0.7 13,568 - +0.8 13,568 - -0.7 13,568 - -1.5 13,578 + -1.4 13,578 + -2.1 13,578 + -1.3 13,578 + -1.3 13,578 + +0.4 13,578 + -0.1 13,578 + -0.3 13,578 + -0.6 13,578 + -0.1 13,578 + -0.8 13,578 + -0.5 13,578 + -0.5 13,578 + +0.7 13,579 - -0.1 13,579 - -0.1 13,579 - -0.0 13,579 - -0.5 13,579 - +0.1 13,582 + -0.1 13,582 + +1.1 13,583 - +1.2 13,583 - +0.7 13,601 + +1.1 13,616 + -0.2 13,616 + -0.9 13,617 - -0.5 13,617 - -0.2 13,697 + GFF7294 0.12 +0.4 13,697 + GFF7294 0.12 +1.5 13,697 + GFF7294 0.12 -2.1 13,698 - GFF7294 0.12 +0.1 13,698 - GFF7294 0.12 -2.6 13,698 - GFF7294 0.12 -1.0 13,700 + GFF7294 0.13 -0.9 13,700 + GFF7294 0.13 -0.2 13,700 + GFF7294 0.13 +0.4 13,700 + GFF7294 0.13 +2.7 13,700 + GFF7294 0.13 +0.7 13,701 - GFF7294 0.13 -0.6 13,701 - GFF7294 0.13 -3.4 13,701 - GFF7294 0.13 -1.6
Or see this region's nucleotide sequence