Strain Fitness in Variovorax sp. SCN45 around GFF723

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF721 and GFF722 overlap by 4 nucleotidesGFF722 and GFF723 are separated by 76 nucleotidesGFF723 and GFF724 overlap by 4 nucleotides GFF721 - O-acetyl-ADP-ribose deacetylase, at 778,768 to 779,274 GFF721 GFF722 - hypothetical protein, at 779,271 to 780,047 GFF722 GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633 GFF723 GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622 GFF724 Position (kb) 780 781Strain fitness (log2 ratio) -2 -1 0 1 2at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.131 kb on + strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.132 kb on - strand, within GFF721at 779.177 kb on + strand, within GFF721at 779.178 kb on - strand, within GFF721at 779.255 kb on - strandat 779.286 kb on + strandat 779.287 kb on - strandat 779.287 kb on - strandat 779.319 kb on + strandat 779.730 kb on + strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.925 kb on + strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.284 kb on + strand, within GFF723at 780.284 kb on + strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.538 kb on + strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.589 kb on + strandat 780.589 kb on + strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.927 kb on + strand, within GFF724at 780.928 kb on - strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.539 kb on + strandat 781.539 kb on + strandat 781.540 kb on - strandat 781.540 kb on - strandat 781.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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779,131 + GFF721 0.72 -0.2
779,131 + GFF721 0.72 +1.1
779,131 + GFF721 0.72 -0.1
779,131 + GFF721 0.72 -1.2
779,131 + GFF721 0.72 -1.2
779,131 + GFF721 0.72 -0.1
779,131 + GFF721 0.72 +0.9
779,131 + GFF721 0.72 +1.5
779,132 - GFF721 0.72 +1.3
779,132 - GFF721 0.72 +0.6
779,132 - GFF721 0.72 -0.4
779,132 - GFF721 0.72 +2.3
779,132 - GFF721 0.72 +0.1
779,132 - GFF721 0.72 +0.3
779,132 - GFF721 0.72 -0.2
779,132 - GFF721 0.72 -1.1
779,132 - GFF721 0.72 -1.5
779,132 - GFF721 0.72 -0.4
779,132 - GFF721 0.72 +0.5
779,132 - GFF721 0.72 -1.2
779,177 + GFF721 0.81 +0.5
779,178 - GFF721 0.81 -1.1
779,255 - -0.6
779,286 + +0.6
779,287 - -0.6
779,287 - -0.6
779,319 + -0.7
779,730 + GFF722 0.59 -1.2
779,731 - GFF722 0.59 -1.5
779,731 - GFF722 0.59 +1.1
779,731 - GFF722 0.59 +2.4
779,850 + GFF722 0.75 -0.1
779,850 + GFF722 0.75 -0.8
779,850 + GFF722 0.75 +1.6
779,850 + GFF722 0.75 -0.0
779,850 + GFF722 0.75 +0.6
779,851 - GFF722 0.75 +0.0
779,851 - GFF722 0.75 -0.0
779,925 + GFF722 0.84 -0.6
779,926 - GFF722 0.84 -0.5
779,926 - GFF722 0.84 -0.9
779,928 + GFF722 0.85 -1.1
779,928 + GFF722 0.85 -0.1
779,928 + GFF722 0.85 +0.9
779,929 - GFF722 0.85 -0.9
779,929 - GFF722 0.85 -0.3
779,929 - GFF722 0.85 +0.8
779,929 - GFF722 0.85 +0.4
779,929 - GFF722 0.85 -0.6
779,929 - GFF722 0.85 -1.2
779,929 - GFF722 0.85 -0.3
780,169 + -0.7
780,169 + +1.6
780,169 + -0.3
780,169 + -0.1
780,170 - -0.9
780,170 - +0.3
780,170 - -0.2
780,284 + GFF723 0.31 +2.3
780,284 + GFF723 0.31 -0.4
780,285 - GFF723 0.32 -0.9
780,285 - GFF723 0.32 +1.1
780,285 - GFF723 0.32 +0.1
780,313 + GFF723 0.37 -0.7
780,313 + GFF723 0.37 -2.6
780,313 + GFF723 0.37 +1.4
780,538 + GFF723 0.81 +0.5
780,539 - GFF723 0.81 -0.1
780,539 - GFF723 0.81 -0.3
780,539 - GFF723 0.81 +0.3
780,589 + -0.1
780,589 + -0.5
780,590 - -0.7
780,590 - -0.4
780,590 - +0.0
780,590 - -0.7
780,927 + GFF724 0.30 -1.7
780,928 - GFF724 0.30 +0.2
781,410 + GFF724 0.79 +0.5
781,410 + GFF724 0.79 -1.1
781,410 + GFF724 0.79 -1.0
781,411 - GFF724 0.79 +0.5
781,411 - GFF724 0.79 -0.7
781,411 - GFF724 0.79 -1.1
781,411 - GFF724 0.79 +0.6
781,539 + -0.4
781,539 + -1.3
781,540 - +0.8
781,540 - +0.2
781,597 - +0.5

Or see this region's nucleotide sequence