Strain Fitness in Variovorax sp. SCN45 around GFF7107

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7106 and GFF7107 overlap by 4 nucleotidesGFF7107 and GFF7108 are separated by 101 nucleotides GFF7106 - BUG/TctC family periplasmic protein, at 23,253 to 24,233 GFF7106 GFF7107 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 24,230 to 25,900 GFF7107 GFF7108 - Transcriptional regulator, LysR family, at 26,002 to 26,907 GFF7108 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 23.283 kb on - strandat 23.283 kb on - strandat 23.283 kb on - strandat 23.317 kb on + strandat 23.317 kb on + strandat 23.317 kb on + strandat 23.317 kb on + strandat 23.317 kb on + strandat 23.317 kb on + strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.400 kb on + strand, within GFF7106at 23.400 kb on + strand, within GFF7106at 23.400 kb on + strand, within GFF7106at 23.400 kb on + strand, within GFF7106at 23.400 kb on + strand, within GFF7106at 23.401 kb on - strand, within GFF7106at 23.401 kb on - strand, within GFF7106at 23.401 kb on - strand, within GFF7106at 23.422 kb on + strand, within GFF7106at 23.423 kb on - strand, within GFF7106at 23.770 kb on + strand, within GFF7106at 23.770 kb on + strand, within GFF7106at 23.770 kb on + strand, within GFF7106at 23.770 kb on + strand, within GFF7106at 23.771 kb on - strand, within GFF7106at 23.771 kb on - strand, within GFF7106at 23.771 kb on - strand, within GFF7106at 23.771 kb on - strand, within GFF7106at 23.771 kb on - strand, within GFF7106at 23.909 kb on - strand, within GFF7106at 23.923 kb on + strand, within GFF7106at 24.209 kb on - strandat 24.260 kb on - strandat 24.347 kb on + strandat 24.347 kb on + strandat 24.347 kb on + strandat 24.348 kb on - strandat 24.348 kb on - strandat 24.348 kb on - strandat 24.366 kb on + strandat 24.366 kb on + strandat 24.483 kb on + strand, within GFF7107at 24.483 kb on + strand, within GFF7107at 24.483 kb on + strand, within GFF7107at 24.483 kb on + strand, within GFF7107at 24.483 kb on + strand, within GFF7107at 24.484 kb on - strand, within GFF7107at 24.484 kb on - strand, within GFF7107at 24.585 kb on + strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.586 kb on - strand, within GFF7107at 24.609 kb on + strand, within GFF7107at 24.610 kb on - strand, within GFF7107at 24.633 kb on + strand, within GFF7107at 24.633 kb on + strand, within GFF7107at 24.633 kb on + strand, within GFF7107at 24.634 kb on - strand, within GFF7107at 24.634 kb on - strand, within GFF7107at 24.634 kb on - strand, within GFF7107at 24.634 kb on - strand, within GFF7107at 24.634 kb on - strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.636 kb on + strand, within GFF7107at 24.637 kb on - strand, within GFF7107at 24.637 kb on - strand, within GFF7107at 24.637 kb on - strand, within GFF7107at 24.637 kb on - strand, within GFF7107at 24.637 kb on - strand, within GFF7107at 24.640 kb on - strand, within GFF7107at 24.666 kb on + strand, within GFF7107at 24.666 kb on + strand, within GFF7107at 24.666 kb on + strand, within GFF7107at 24.667 kb on - strand, within GFF7107at 24.687 kb on + strand, within GFF7107at 24.687 kb on + strand, within GFF7107at 24.687 kb on + strand, within GFF7107at 24.688 kb on - strand, within GFF7107at 24.688 kb on - strand, within GFF7107at 24.688 kb on - strand, within GFF7107at 24.821 kb on - strand, within GFF7107at 24.823 kb on + strand, within GFF7107at 24.823 kb on + strand, within GFF7107at 24.823 kb on + strand, within GFF7107at 24.823 kb on + strand, within GFF7107at 24.824 kb on - strand, within GFF7107at 24.824 kb on - strand, within GFF7107at 24.824 kb on - strand, within GFF7107at 24.843 kb on + strand, within GFF7107at 24.843 kb on + strand, within GFF7107at 24.843 kb on + strand, within GFF7107at 24.843 kb on + strand, within GFF7107at 24.844 kb on - strand, within GFF7107at 24.902 kb on + strand, within GFF7107at 24.902 kb on + strand, within GFF7107at 24.902 kb on + strand, within GFF7107at 24.903 kb on - strand, within GFF7107at 24.940 kb on - strand, within GFF7107at 24.940 kb on - strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.143 kb on + strand, within GFF7107at 25.144 kb on - strand, within GFF7107at 25.144 kb on - strand, within GFF7107at 25.144 kb on - strand, within GFF7107at 25.144 kb on - strand, within GFF7107at 25.144 kb on - strand, within GFF7107at 25.182 kb on + strand, within GFF7107at 25.182 kb on + strand, within GFF7107at 25.182 kb on + strand, within GFF7107at 25.182 kb on + strand, within GFF7107at 25.182 kb on + strand, within GFF7107at 25.183 kb on - strand, within GFF7107at 25.183 kb on - strand, within GFF7107at 25.292 kb on + strand, within GFF7107at 25.292 kb on + strand, within GFF7107at 25.293 kb on - strand, within GFF7107at 25.293 kb on - strand, within GFF7107at 25.368 kb on + strand, within GFF7107at 25.524 kb on + strand, within GFF7107at 25.524 kb on + strand, within GFF7107at 25.524 kb on + strand, within GFF7107at 25.524 kb on + strand, within GFF7107at 25.525 kb on - strand, within GFF7107at 25.525 kb on - strand, within GFF7107at 25.525 kb on - strand, within GFF7107at 25.593 kb on + strand, within GFF7107at 25.593 kb on + strand, within GFF7107at 25.593 kb on + strand, within GFF7107at 25.593 kb on + strand, within GFF7107at 25.594 kb on - strand, within GFF7107at 25.651 kb on + strand, within GFF7107at 25.675 kb on - strand, within GFF7107at 25.808 kb on + strandat 25.808 kb on + strandat 25.808 kb on + strandat 25.809 kb on - strandat 25.809 kb on - strandat 25.809 kb on - strandat 25.809 kb on - strandat 25.809 kb on - strandat 25.809 kb on - strandat 25.956 kb on + strandat 25.956 kb on + strandat 25.957 kb on - strandat 25.957 kb on - strandat 25.957 kb on - strandat 25.957 kb on - strandat 25.984 kb on + strandat 25.986 kb on + strandat 25.997 kb on + strandat 26.050 kb on + strandat 26.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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23,283 - -1.1
23,283 - -0.1
23,283 - -1.5
23,317 + -0.5
23,317 + +0.3
23,317 + +0.2
23,317 + -1.5
23,317 + -0.7
23,317 + -1.1
23,318 - -1.1
23,318 - -0.1
23,318 - -1.0
23,318 - +0.1
23,318 - +1.0
23,318 - -0.5
23,318 - +0.0
23,318 - +0.0
23,400 + GFF7106 0.15 -0.8
23,400 + GFF7106 0.15 -0.4
23,400 + GFF7106 0.15 -0.1
23,400 + GFF7106 0.15 -2.3
23,400 + GFF7106 0.15 -1.5
23,401 - GFF7106 0.15 -0.0
23,401 - GFF7106 0.15 -0.2
23,401 - GFF7106 0.15 +0.5
23,422 + GFF7106 0.17 +1.1
23,423 - GFF7106 0.17 -0.2
23,770 + GFF7106 0.53 -0.2
23,770 + GFF7106 0.53 -1.3
23,770 + GFF7106 0.53 -0.4
23,770 + GFF7106 0.53 +0.8
23,771 - GFF7106 0.53 -1.9
23,771 - GFF7106 0.53 +0.9
23,771 - GFF7106 0.53 +0.4
23,771 - GFF7106 0.53 -0.5
23,771 - GFF7106 0.53 -0.7
23,909 - GFF7106 0.67 -0.3
23,923 + GFF7106 0.68 -1.2
24,209 - +0.5
24,260 - -0.3
24,347 + -0.2
24,347 + +0.1
24,347 + +0.7
24,348 - +0.6
24,348 - -0.4
24,348 - +0.1
24,366 + -0.1
24,366 + +0.1
24,483 + GFF7107 0.15 -0.6
24,483 + GFF7107 0.15 -1.1
24,483 + GFF7107 0.15 -0.6
24,483 + GFF7107 0.15 +0.1
24,483 + GFF7107 0.15 -0.4
24,484 - GFF7107 0.15 -2.4
24,484 - GFF7107 0.15 -0.0
24,585 + GFF7107 0.21 -0.9
24,586 - GFF7107 0.21 -0.4
24,586 - GFF7107 0.21 +0.2
24,586 - GFF7107 0.21 -0.2
24,586 - GFF7107 0.21 -2.1
24,586 - GFF7107 0.21 -0.3
24,586 - GFF7107 0.21 +2.4
24,609 + GFF7107 0.23 -0.4
24,610 - GFF7107 0.23 -2.0
24,633 + GFF7107 0.24 -0.4
24,633 + GFF7107 0.24 -0.9
24,633 + GFF7107 0.24 +0.5
24,634 - GFF7107 0.24 +1.2
24,634 - GFF7107 0.24 +0.2
24,634 - GFF7107 0.24 -0.5
24,634 - GFF7107 0.24 +0.4
24,634 - GFF7107 0.24 -0.3
24,636 + GFF7107 0.24 -0.2
24,636 + GFF7107 0.24 -0.3
24,636 + GFF7107 0.24 +0.1
24,636 + GFF7107 0.24 -0.3
24,636 + GFF7107 0.24 +0.1
24,636 + GFF7107 0.24 -0.0
24,636 + GFF7107 0.24 -0.6
24,636 + GFF7107 0.24 -1.2
24,636 + GFF7107 0.24 +0.3
24,636 + GFF7107 0.24 +0.2
24,637 - GFF7107 0.24 -0.3
24,637 - GFF7107 0.24 -0.4
24,637 - GFF7107 0.24 -0.6
24,637 - GFF7107 0.24 -0.3
24,637 - GFF7107 0.24 -0.4
24,640 - GFF7107 0.25 -0.0
24,666 + GFF7107 0.26 +0.4
24,666 + GFF7107 0.26 +0.3
24,666 + GFF7107 0.26 +1.0
24,667 - GFF7107 0.26 -0.0
24,687 + GFF7107 0.27 -0.4
24,687 + GFF7107 0.27 -0.2
24,687 + GFF7107 0.27 -0.6
24,688 - GFF7107 0.27 -0.9
24,688 - GFF7107 0.27 -1.5
24,688 - GFF7107 0.27 -1.1
24,821 - GFF7107 0.35 -0.2
24,823 + GFF7107 0.35 -0.5
24,823 + GFF7107 0.35 -0.7
24,823 + GFF7107 0.35 +0.4
24,823 + GFF7107 0.35 -0.5
24,824 - GFF7107 0.36 +1.1
24,824 - GFF7107 0.36 +0.4
24,824 - GFF7107 0.36 +0.0
24,843 + GFF7107 0.37 +0.4
24,843 + GFF7107 0.37 -0.4
24,843 + GFF7107 0.37 -0.2
24,843 + GFF7107 0.37 -0.1
24,844 - GFF7107 0.37 +0.6
24,902 + GFF7107 0.40 -2.0
24,902 + GFF7107 0.40 +0.5
24,902 + GFF7107 0.40 +1.7
24,903 - GFF7107 0.40 -0.1
24,940 - GFF7107 0.42 -0.6
24,940 - GFF7107 0.42 -0.3
25,143 + GFF7107 0.55 +0.5
25,143 + GFF7107 0.55 +0.1
25,143 + GFF7107 0.55 -1.4
25,143 + GFF7107 0.55 -0.7
25,143 + GFF7107 0.55 -0.7
25,143 + GFF7107 0.55 +0.1
25,144 - GFF7107 0.55 -0.3
25,144 - GFF7107 0.55 +0.4
25,144 - GFF7107 0.55 -0.3
25,144 - GFF7107 0.55 +0.9
25,144 - GFF7107 0.55 -0.0
25,182 + GFF7107 0.57 +1.3
25,182 + GFF7107 0.57 +0.6
25,182 + GFF7107 0.57 +0.9
25,182 + GFF7107 0.57 +1.1
25,182 + GFF7107 0.57 -0.2
25,183 - GFF7107 0.57 +0.1
25,183 - GFF7107 0.57 +0.5
25,292 + GFF7107 0.64 +1.6
25,292 + GFF7107 0.64 +1.0
25,293 - GFF7107 0.64 +0.4
25,293 - GFF7107 0.64 +0.8
25,368 + GFF7107 0.68 +0.1
25,524 + GFF7107 0.77 +0.2
25,524 + GFF7107 0.77 -0.5
25,524 + GFF7107 0.77 +1.7
25,524 + GFF7107 0.77 -0.1
25,525 - GFF7107 0.77 -0.5
25,525 - GFF7107 0.77 +0.0
25,525 - GFF7107 0.77 +0.5
25,593 + GFF7107 0.82 -0.7
25,593 + GFF7107 0.82 +0.4
25,593 + GFF7107 0.82 +0.4
25,593 + GFF7107 0.82 -0.6
25,594 - GFF7107 0.82 -0.1
25,651 + GFF7107 0.85 -0.6
25,675 - GFF7107 0.86 -0.0
25,808 + +0.1
25,808 + +0.3
25,808 + -0.4
25,809 - -1.6
25,809 - -0.5
25,809 - +0.3
25,809 - -0.3
25,809 - +1.3
25,809 - +0.6
25,956 + +1.6
25,956 + -0.4
25,957 - +0.7
25,957 - -0.6
25,957 - -0.1
25,957 - +0.6
25,984 + -0.5
25,986 + -0.9
25,997 + +0.7
26,050 + -1.0
26,050 + -0.3

Or see this region's nucleotide sequence