Strain Fitness in Variovorax sp. SCN45 around GFF6780

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6779 and GFF6780 are separated by 302 nucleotidesGFF6780 and GFF6781 are separated by 86 nucleotides GFF6779 - ATP-dependent RNA helicase RhlE (EC 3.6.4.13), at 25,913 to 27,718 GFF6779 GFF6780 - Energy-dependent translational throttle protein EttA, at 28,021 to 29,682 GFF6780 GFF6781 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 29,769 to 31,556 GFF6781 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.110 kb on + strand, within GFF6779at 27.111 kb on - strand, within GFF6779at 27.411 kb on + strand, within GFF6779at 27.411 kb on + strand, within GFF6779at 27.412 kb on - strand, within GFF6779at 27.412 kb on - strand, within GFF6779at 27.412 kb on - strand, within GFF6779at 27.420 kb on + strand, within GFF6779at 27.421 kb on - strand, within GFF6779at 27.553 kb on + strandat 27.553 kb on + strandat 27.554 kb on - strandat 27.657 kb on + strandat 27.658 kb on - strandat 27.658 kb on - strandat 27.728 kb on + strandat 27.728 kb on + strandat 27.729 kb on - strandat 27.737 kb on + strandat 27.917 kb on + strandat 27.917 kb on + strandat 27.917 kb on + strandat 27.917 kb on + strandat 27.918 kb on - strandat 27.918 kb on - strandat 27.918 kb on - strandat 27.999 kb on + strandat 27.999 kb on + strandat 27.999 kb on + strandat 28.008 kb on + strandat 28.008 kb on + strandat 28.008 kb on + strandat 28.008 kb on + strandat 28.008 kb on + strandat 28.009 kb on - strandat 28.009 kb on - strandat 28.009 kb on - strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.013 kb on - strandat 28.013 kb on - strandat 28.013 kb on - strandat 28.030 kb on + strandat 28.030 kb on + strandat 28.030 kb on + strandat 28.030 kb on + strandat 28.030 kb on + strandat 28.031 kb on - strandat 28.031 kb on - strandat 28.036 kb on + strandat 28.039 kb on + strandat 28.193 kb on - strand, within GFF6780at 28.237 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.342 kb on + strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.343 kb on - strand, within GFF6780at 28.675 kb on + strand, within GFF6780at 28.675 kb on + strand, within GFF6780at 28.675 kb on + strand, within GFF6780at 28.676 kb on - strand, within GFF6780at 28.676 kb on - strand, within GFF6780at 28.676 kb on - strand, within GFF6780at 28.676 kb on - strand, within GFF6780at 28.747 kb on + strand, within GFF6780at 28.747 kb on + strand, within GFF6780at 28.747 kb on + strand, within GFF6780at 28.747 kb on + strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 28.748 kb on - strand, within GFF6780at 29.296 kb on + strand, within GFF6780at 29.596 kb on + strandat 29.597 kb on - strandat 29.597 kb on - strandat 29.597 kb on - strandat 29.605 kb on + strandat 29.605 kb on + strandat 29.606 kb on - strandat 29.665 kb on + strandat 29.665 kb on + strandat 29.680 kb on + strandat 29.680 kb on + strandat 29.680 kb on + strandat 29.680 kb on + strandat 29.681 kb on - strandat 29.681 kb on - strandat 29.681 kb on - strandat 29.681 kb on - strandat 29.770 kb on + strandat 29.771 kb on - strandat 30.064 kb on + strand, within GFF6781at 30.065 kb on - strand, within GFF6781at 30.065 kb on - strand, within GFF6781at 30.065 kb on - strand, within GFF6781at 30.132 kb on + strand, within GFF6781at 30.292 kb on + strand, within GFF6781at 30.293 kb on - strand, within GFF6781at 30.293 kb on - strand, within GFF6781at 30.592 kb on + strand, within GFF6781at 30.592 kb on + strand, within GFF6781at 30.592 kb on + strand, within GFF6781at 30.592 kb on + strand, within GFF6781at 30.593 kb on - strand, within GFF6781

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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27,110 + GFF6779 0.66 +0.1
27,111 - GFF6779 0.66 -0.6
27,411 + GFF6779 0.83 -1.2
27,411 + GFF6779 0.83 -0.3
27,412 - GFF6779 0.83 -0.4
27,412 - GFF6779 0.83 +0.6
27,412 - GFF6779 0.83 +0.6
27,420 + GFF6779 0.83 -0.1
27,421 - GFF6779 0.83 +0.7
27,553 + -0.9
27,553 + +0.8
27,554 - -0.3
27,657 + -0.5
27,658 - -1.0
27,658 - +0.1
27,728 + -1.0
27,728 + +2.4
27,729 - -3.0
27,737 + -1.2
27,917 + -0.6
27,917 + +1.0
27,917 + -1.1
27,917 + -0.6
27,918 - +0.8
27,918 - -1.6
27,918 - +0.3
27,999 + -0.1
27,999 + +0.3
27,999 + +0.0
28,008 + -0.8
28,008 + -0.2
28,008 + +1.0
28,008 + -1.8
28,008 + -1.2
28,009 - +0.2
28,009 - -0.8
28,009 - +0.8
28,012 + +0.1
28,012 + +1.0
28,012 + -0.7
28,013 - -0.0
28,013 - +0.1
28,013 - +0.8
28,030 + -0.4
28,030 + -0.8
28,030 + +0.4
28,030 + -0.3
28,030 + +0.4
28,031 - -0.9
28,031 - -0.8
28,036 + -0.2
28,039 + -0.3
28,193 - GFF6780 0.10 -1.5
28,237 + GFF6780 0.13 -0.2
28,342 + GFF6780 0.19 -0.4
28,342 + GFF6780 0.19 -0.2
28,342 + GFF6780 0.19 -0.1
28,342 + GFF6780 0.19 +0.9
28,342 + GFF6780 0.19 -1.1
28,342 + GFF6780 0.19 +1.4
28,342 + GFF6780 0.19 -1.4
28,342 + GFF6780 0.19 -1.2
28,342 + GFF6780 0.19 -1.7
28,342 + GFF6780 0.19 +0.9
28,342 + GFF6780 0.19 -0.5
28,342 + GFF6780 0.19 -0.2
28,342 + GFF6780 0.19 -0.1
28,342 + GFF6780 0.19 -0.7
28,343 - GFF6780 0.19 -0.7
28,343 - GFF6780 0.19 +0.1
28,343 - GFF6780 0.19 -2.5
28,343 - GFF6780 0.19 -1.2
28,343 - GFF6780 0.19 +0.5
28,343 - GFF6780 0.19 -0.8
28,343 - GFF6780 0.19 -2.9
28,343 - GFF6780 0.19 -1.6
28,343 - GFF6780 0.19 -1.3
28,343 - GFF6780 0.19 -1.5
28,343 - GFF6780 0.19 -1.2
28,675 + GFF6780 0.39 -1.2
28,675 + GFF6780 0.39 +0.4
28,675 + GFF6780 0.39 -0.3
28,676 - GFF6780 0.39 -0.4
28,676 - GFF6780 0.39 -0.9
28,676 - GFF6780 0.39 +0.4
28,676 - GFF6780 0.39 -0.5
28,747 + GFF6780 0.44 -0.9
28,747 + GFF6780 0.44 -0.0
28,747 + GFF6780 0.44 -1.9
28,747 + GFF6780 0.44 -0.3
28,748 - GFF6780 0.44 -0.4
28,748 - GFF6780 0.44 -1.2
28,748 - GFF6780 0.44 -0.2
28,748 - GFF6780 0.44 +0.2
28,748 - GFF6780 0.44 -2.8
28,748 - GFF6780 0.44 -0.5
28,748 - GFF6780 0.44 -0.8
28,748 - GFF6780 0.44 -0.5
29,296 + GFF6780 0.77 -0.1
29,596 + +1.1
29,597 - -0.9
29,597 - +0.8
29,597 - -1.1
29,605 + -0.0
29,605 + -0.6
29,606 - +0.3
29,665 + +0.2
29,665 + +0.6
29,680 + -0.7
29,680 + -0.3
29,680 + -0.2
29,680 + +0.7
29,681 - +0.5
29,681 - -0.2
29,681 - -0.4
29,681 - -0.7
29,770 + +0.8
29,771 - +0.2
30,064 + GFF6781 0.16 +0.4
30,065 - GFF6781 0.17 -1.2
30,065 - GFF6781 0.17 -0.1
30,065 - GFF6781 0.17 -0.3
30,132 + GFF6781 0.20 -0.0
30,292 + GFF6781 0.29 +0.1
30,293 - GFF6781 0.29 -0.1
30,293 - GFF6781 0.29 -0.7
30,592 + GFF6781 0.46 +0.4
30,592 + GFF6781 0.46 -1.0
30,592 + GFF6781 0.46 +0.0
30,592 + GFF6781 0.46 +0.4
30,593 - GFF6781 0.46 +0.1

Or see this region's nucleotide sequence