Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6722 and GFF6723 are separated by 3 nucleotides GFF6723 and GFF6724 are separated by 74 nucleotides
GFF6722 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 31,626 to 32,522
GFF6722
GFF6723 - Cysteine desulfurase (EC 2.8.1.7), at 32,526 to 33,821
GFF6723
GFF6724 - hypothetical protein, at 33,896 to 35,020
GFF6724
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1 at 31.776 kb on + strand, within GFF6722 at 31.776 kb on + strand, within GFF6722 at 31.885 kb on - strand, within GFF6722 at 32.220 kb on + strand, within GFF6722 at 32.221 kb on - strand, within GFF6722 at 32.221 kb on - strand, within GFF6722 at 32.280 kb on + strand, within GFF6722 at 32.280 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.412 kb on + strand, within GFF6722 at 32.413 kb on - strand, within GFF6722 at 32.493 kb on + strand at 32.493 kb on + strand at 32.646 kb on + strand at 32.646 kb on + strand at 32.647 kb on - strand at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 32.827 kb on - strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.072 kb on + strand, within GFF6723 at 33.073 kb on - strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.150 kb on + strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.151 kb on - strand, within GFF6723 at 33.237 kb on + strand, within GFF6723 at 33.393 kb on + strand, within GFF6723 at 33.394 kb on - strand, within GFF6723 at 33.646 kb on - strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.669 kb on + strand, within GFF6723 at 33.694 kb on - strand at 33.829 kb on - strand at 33.829 kb on - strand at 33.838 kb on + strand at 33.839 kb on - strand at 33.849 kb on + strand at 33.849 kb on + strand at 33.850 kb on - strand at 34.268 kb on + strand, within GFF6724 at 34.268 kb on + strand, within GFF6724 at 34.352 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.355 kb on + strand, within GFF6724 at 34.356 kb on - strand, within GFF6724 at 34.356 kb on - strand, within GFF6724 at 34.500 kb on - strand, within GFF6724 at 34.500 kb on - strand, within GFF6724 at 34.517 kb on + strand, within GFF6724 at 34.518 kb on - strand, within GFF6724 at 34.644 kb on - strand, within GFF6724 at 34.686 kb on - strand, within GFF6724 at 34.686 kb on - strand, within GFF6724 at 34.755 kb on - strand, within GFF6724
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 31,776 + GFF6722 0.17 +0.2 31,776 + GFF6722 0.17 -1.6 31,885 - GFF6722 0.29 +0.2 32,220 + GFF6722 0.66 +0.5 32,221 - GFF6722 0.66 -1.8 32,221 - GFF6722 0.66 -0.0 32,280 + GFF6722 0.73 -0.1 32,280 + GFF6722 0.73 +0.1 32,412 + GFF6722 0.88 -1.5 32,412 + GFF6722 0.88 +1.6 32,412 + GFF6722 0.88 -1.0 32,412 + GFF6722 0.88 +0.0 32,413 - GFF6722 0.88 +0.3 32,493 + -0.6 32,493 + +0.1 32,646 + +0.9 32,646 + +0.3 32,647 - -1.6 32,827 - GFF6723 0.23 -1.1 32,827 - GFF6723 0.23 -1.3 32,827 - GFF6723 0.23 -1.0 32,827 - GFF6723 0.23 -0.5 33,072 + GFF6723 0.42 +0.3 33,072 + GFF6723 0.42 -0.5 33,072 + GFF6723 0.42 +0.2 33,073 - GFF6723 0.42 -1.2 33,150 + GFF6723 0.48 -1.1 33,150 + GFF6723 0.48 -0.3 33,150 + GFF6723 0.48 -2.0 33,150 + GFF6723 0.48 +0.1 33,150 + GFF6723 0.48 +0.0 33,150 + GFF6723 0.48 -0.7 33,150 + GFF6723 0.48 +0.2 33,151 - GFF6723 0.48 -0.2 33,151 - GFF6723 0.48 -1.1 33,151 - GFF6723 0.48 +0.0 33,151 - GFF6723 0.48 -0.7 33,151 - GFF6723 0.48 -0.7 33,151 - GFF6723 0.48 -0.5 33,237 + GFF6723 0.55 -0.5 33,393 + GFF6723 0.67 -0.5 33,394 - GFF6723 0.67 +0.2 33,646 - GFF6723 0.86 -0.1 33,669 + GFF6723 0.88 +0.3 33,669 + GFF6723 0.88 -0.2 33,669 + GFF6723 0.88 -2.3 33,694 - -0.6 33,829 - -0.2 33,829 - -0.2 33,838 + +0.5 33,839 - -1.0 33,849 + -1.0 33,849 + -0.3 33,850 - -0.2 34,268 + GFF6724 0.33 +1.4 34,268 + GFF6724 0.33 -0.9 34,352 + GFF6724 0.41 +0.6 34,355 + GFF6724 0.41 -0.6 34,355 + GFF6724 0.41 +1.3 34,355 + GFF6724 0.41 +0.1 34,355 + GFF6724 0.41 +0.4 34,356 - GFF6724 0.41 +0.8 34,356 - GFF6724 0.41 -0.4 34,500 - GFF6724 0.54 +0.0 34,500 - GFF6724 0.54 +1.4 34,517 + GFF6724 0.55 -0.1 34,518 - GFF6724 0.55 +0.3 34,644 - GFF6724 0.66 -1.0 34,686 - GFF6724 0.70 -0.6 34,686 - GFF6724 0.70 +0.6 34,755 - GFF6724 0.76 -0.5
Or see this region's nucleotide sequence