Strain Fitness in Variovorax sp. SCN45 around GFF6650

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6648 and GFF6649 are separated by 11 nucleotidesGFF6649 and GFF6650 are separated by 156 nucleotidesGFF6650 and GFF6651 overlap by 9 nucleotidesGFF6651 and GFF6652 are separated by 13 nucleotides GFF6648 - hypothetical protein, at 21,375 to 23,114 GFF6648 GFF6649 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 23,126 to 23,950 GFF6649 GFF6650 - no description, at 24,107 to 24,991 GFF6650 GFF6651 - Asp/Glu racemase, at 24,983 to 25,624 GFF6651 GFF6652 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 25,638 to 26,552 GFF6652 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.194 kb on - strandat 23.194 kb on - strandat 23.229 kb on + strand, within GFF6649at 23.229 kb on + strand, within GFF6649at 23.229 kb on + strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.334 kb on + strand, within GFF6649at 23.334 kb on + strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.763 kb on + strand, within GFF6649at 23.763 kb on + strand, within GFF6649at 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.976 kb on + strandat 24.022 kb on + strandat 24.022 kb on + strandat 24.022 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.063 kb on + strandat 24.064 kb on - strandat 24.064 kb on - strandat 24.479 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 25.437 kb on + strand, within GFF6651at 25.696 kb on + strandat 25.697 kb on - strandat 25.748 kb on - strand, within GFF6652at 25.748 kb on - strand, within GFF6652

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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23,194 - -0.8
23,194 - +0.5
23,229 + GFF6649 0.12 -0.2
23,229 + GFF6649 0.12 +0.6
23,229 + GFF6649 0.12 -1.8
23,230 - GFF6649 0.13 +0.4
23,230 - GFF6649 0.13 +0.2
23,230 - GFF6649 0.13 -0.7
23,334 + GFF6649 0.25 -0.2
23,334 + GFF6649 0.25 +0.3
23,335 - GFF6649 0.25 -0.6
23,335 - GFF6649 0.25 -0.8
23,335 - GFF6649 0.25 +0.2
23,335 - GFF6649 0.25 +0.3
23,335 - GFF6649 0.25 +1.6
23,335 - GFF6649 0.25 -0.2
23,335 - GFF6649 0.25 +0.2
23,343 + GFF6649 0.26 -0.5
23,343 + GFF6649 0.26 +0.2
23,343 + GFF6649 0.26 -0.7
23,343 + GFF6649 0.26 -0.4
23,344 - GFF6649 0.26 +0.4
23,344 - GFF6649 0.26 -0.5
23,344 - GFF6649 0.26 -1.4
23,763 + GFF6649 0.77 +0.8
23,763 + GFF6649 0.77 -0.2
23,954 + -0.1
23,954 + -1.4
23,954 + -0.9
23,954 + -2.1
23,954 + -1.9
23,954 + +0.2
23,955 - -0.1
23,955 - -0.5
23,955 - -0.8
23,955 - -0.1
23,955 - +0.5
23,955 - -0.2
23,976 + -1.6
24,022 + -0.7
24,022 + -0.1
24,022 + -1.8
24,026 + -2.1
24,026 + -0.6
24,026 + +0.6
24,026 + -0.2
24,026 + +0.6
24,026 + -0.6
24,026 + +0.4
24,026 + -0.0
24,026 + -1.2
24,026 + +0.5
24,026 + -0.1
24,027 - +0.0
24,027 - -2.2
24,027 - +0.3
24,027 - -0.8
24,027 - -1.9
24,027 - -0.2
24,027 - +0.6
24,027 - +0.1
24,027 - -1.0
24,027 - -0.5
24,027 - +0.1
24,027 - -0.1
24,027 - -1.3
24,038 + -0.6
24,038 + -0.6
24,063 + -0.3
24,064 - -0.4
24,064 - +1.6
24,479 + GFF6650 0.42 -1.1
24,671 + GFF6650 0.64 -1.2
24,671 + GFF6650 0.64 -0.8
24,671 + GFF6650 0.64 -0.3
24,671 + GFF6650 0.64 -0.1
24,671 + GFF6650 0.64 -0.0
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 +0.7
24,671 + GFF6650 0.64 +0.4
24,671 + GFF6650 0.64 -0.0
24,671 + GFF6650 0.64 -0.5
24,671 + GFF6650 0.64 +0.9
24,671 + GFF6650 0.64 +0.6
24,672 - GFF6650 0.64 +0.1
24,672 - GFF6650 0.64 -1.8
24,672 - GFF6650 0.64 -0.1
24,672 - GFF6650 0.64 +0.1
24,672 - GFF6650 0.64 -0.8
24,672 - GFF6650 0.64 -1.8
24,672 - GFF6650 0.64 -0.3
24,672 - GFF6650 0.64 -2.4
24,672 - GFF6650 0.64 -0.0
24,672 - GFF6650 0.64 -0.9
24,672 - GFF6650 0.64 -1.0
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 -1.0
24,672 - GFF6650 0.64 +0.0
24,672 - GFF6650 0.64 +2.0
24,672 - GFF6650 0.64 +0.5
24,672 - GFF6650 0.64 -1.1
24,710 + GFF6650 0.68 -0.7
24,710 + GFF6650 0.68 +0.0
24,710 + GFF6650 0.68 -0.3
24,710 + GFF6650 0.68 +0.0
24,710 + GFF6650 0.68 -1.1
24,711 - GFF6650 0.68 -1.1
24,711 - GFF6650 0.68 +0.1
24,711 - GFF6650 0.68 +0.2
24,806 + GFF6650 0.79 +0.1
24,806 + GFF6650 0.79 -0.8
24,806 + GFF6650 0.79 -0.1
24,806 + GFF6650 0.79 +1.0
24,806 + GFF6650 0.79 -0.4
24,806 + GFF6650 0.79 -0.6
24,806 + GFF6650 0.79 +0.1
24,806 + GFF6650 0.79 +0.9
24,806 + GFF6650 0.79 -0.7
24,807 - GFF6650 0.79 -1.4
24,807 - GFF6650 0.79 +0.4
24,807 - GFF6650 0.79 -2.3
24,807 - GFF6650 0.79 -1.6
24,807 - GFF6650 0.79 -0.9
24,807 - GFF6650 0.79 +1.4
24,807 - GFF6650 0.79 -1.4
24,807 - GFF6650 0.79 -0.6
24,854 + GFF6650 0.84 +0.8
24,854 + GFF6650 0.84 -0.7
24,855 - GFF6650 0.85 -0.6
24,855 - GFF6650 0.85 -1.4
24,855 - GFF6650 0.85 -0.8
24,855 - GFF6650 0.85 -0.0
24,855 - GFF6650 0.85 +1.0
25,437 + GFF6651 0.71 -1.6
25,696 + -0.9
25,697 - +1.0
25,748 - GFF6652 0.12 +1.1
25,748 - GFF6652 0.12 -0.6

Or see this region's nucleotide sequence